Return to main results Retrieve Phyre Job Id

Job DescriptionP37902
Confidence97.62%DateThu Jan 5 11:57:43 GMT 2012
Rank42Aligned Residues199
% Identity11%Templatec3l6gA_
PDB info PDB header:glycine betaine-binding proteinChain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   70.........80.........90.........100.........110... ......120.........130.........140..
Predicted Secondary structure 















.......












Query SS confidence 











































. . . . . . .




























Query Sequence  SNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNGTFDFECGS. . . . . . . TTNNVERQKQAAFSDTIFVVGTRLLTKKG
Query Conservation     
   
                              
     .......                             
Alig confidence 











































.......




























Template Conservation        
    

  
  

           

 

 


      
             
             
 
   
Template Sequence  EVASINVLTQAMKEHGFDVKTTALDNAVAWQTVANGQADGMVSAWLPNTHKTQWQKYGKSVDLLGPNLKGAKVGFVVPSY
Template Known Secondary structure  TT

TTSSSTTTTGGGTT
Template Predicted Secondary structure 


























Template SS confidence 















































































   333......340.........350.........360.........370.........380.........390.........400.........410..
 
   143......150.........160.........170.........180....... ..190.........200.........210...
Predicted Secondary structure 




























.........





Query SS confidence 












































. . . . . . . . .

























Query Sequence  GDIKDFANLKDKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDH. . . . . . . . . GDSFRTLESGRAVAFMMDDALLAGER
Query Conservation                                               .........      
     
             
Alig confidence 












































.........




















..


Template Conservation    
 
  

 
   
   
              
                    
    

  
 


     
 ..   
Template Sequence  MNVNSIEDLTNQANKTITGIEPGAGVMAASEKTLNSYDNLKDWKLVPSSSGAMTVALGEAIKQHKDIVITGWSPH. . WMF
Template Known Secondary structure  S


BGGG
SSGGGG


TT
TT
GGGTT



TT



S
..T
Template Predicted Secondary structure 
































..
Template SS confidence 















































































   413......420.........430.........440.........450.........460.........470.........480....... ..490
 
   214.....220.........230.........240. ........ 250.........260.........270
Predicted Secondary structure 

















....
..........


Query SS confidence 



























. . . .







. . . . . . . . . .




















Query Sequence  AKAKKPDNWEIVGKPQSQEAYGCMLRKD. . . . DPQFKKLM. . . . . . . . . . DDTIAQVQTSGEAEKWFDKWF
Query Conservation                            
 ....   
   
..........
 

  
   
    
  


Alig confidence 



























....







..........




















Template Conservation         
                         
     
                
     
 
 
  

Template Sequence  NKYDLKYLADPKGTMGTSENINTIVRKGLKKENPEAYKVLDKFNWTTKDMEAVMLDIQNGKTPEEAAKNWI
Template Known Secondary structure  S

B
TT
TT


TT




TT

Template Predicted Secondary structure 

























Template SS confidence 






































































   491........500.........510.........520.........530.........540.........550.........560.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions