Job Description P37902 Confidence 100.00% Date Thu Jan 5 11:57:43 GMT 2012 Rank 19 Aligned Residues 218 % Identity 16% Template c3i6vA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic his/glu/gln/arg/opine family-binding protein; PDBTitle: crystal structure of a periplasmic his/glu/gln/arg/opine family-2 binding protein from silicibacter pomeroyi in complex with lysine Resolution 2.00 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	V	V	G	H	R	E	S	S	V	P	F	S	Y	Y	D	N	Q	Q	K	V	V	G	Y	S	Q	D	Y	S	N	A	I	V	E	A	V	K	K	K	L	N	K	P	D	L	Q	V	K	L	I	P	I	T	S	Q	N	R	I	P	L	L	Q	N	G	T	F	D	F	E	C	G	S	T	T	N	N	V	E	R
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.
Template Sequence		T	V	R	M	G	T	E	G	A	Y	P	P	Y	N	F	I	N	D	A	G	E	V	D	G	F	E	R	E	L	G	D	E	L	C	K	R	A	G	.	.	.	.	.	.	.	L	T	C	E	W	V	K	N	D	W	D	S	I	I	P	N	L	V	S	G	N	Y	D	T	I	I	A	G	M	S	I	T	D	E	R
Template Known Secondary structure									S			T	T	T					T	T	S				S														T	.	.	.	.	.	.	.										G	G	G							T	T	S		S				S	S		B
Template Predicted Secondary structure																																								.	.	.	.	.	.	.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.								90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	Q	A	A	F	S	D	T	I	F	V	V	G	T	R	L	L	T	K	K	G	G	D	I	K	D	F	A	N	L	K	D	K	A	V	V	V	T	S	G	T	T	S	E	V	L	L	N	K	L	N	E	E	Q	K	M	N	M	R	I	I	S	A	K	D	H	G	D	S	F	R	T	L	E	S	G	R	A	V
Query Conservation
Alig confidence																									.	.	.	.	.																							.	.	.	.	.	.
Template Conservation																									.	.	.	.	.																							.	.	.	.	.	.
Template Sequence		D	E	V	I	D	F	T	Q	N	Y	I	P	P	T	A	S	S	Y	V	A	T	S	D	.	.	.	.	.	G	A	D	L	S	G	I	V	A	A	Q	T	A	T	I	Q	A	G	Y	I	A	E	.	.	.	.	.	.	S	G	A	T	L	V	E	F	A	T	P	E	E	T	I	A	A	V	R	N	G	E	A	D
Template Known Secondary structure			T	T	S																	S	S	T	.	.	.	.	.	T			T	T	S						T	T	S									.	.	.	.	.	.	S	S	S						S	S										T	T	S	S	S
Template Predicted Secondary structure																									.	.	.	.	.																							.	.	.	.	.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.						.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.							170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	M	M	D	D	A	L	L	A	G	E	R	A	K	A	K	K	P	D	N	W	E	I	V	G	K	P	Q	S	Q	E	A	Y	G	C	M	L	R	K	D	D	P	Q	F	K	K	L	M	D	D	T	I	A	Q	V	Q	T	S	G	E	A	E	K	W	F	D	K	W	F	K	N	P	I	P	P	K
Query Conservation
Alig confidence																				.
Template Conservation																				.
Template Sequence		A	V	F	A	D	R	D	Y	L	V	P	I	V	A	E	S	G	G	.	E	L	M	F	V	G	D	D	V	P	L	G	G	G	V	G	M	G	L	R	E	S	D	G	E	L	R	G	K	F	D	A	A	I	T	S	M	K	E	D	G	T	L	N	T	M	I	K	K	W	F	G	E	D	A	A	V	Y
Template Known Secondary structure																	T	T	T	.	S	S										S	S								T	T																		T	S												T	T	S
Template Predicted Secondary structure																				.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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