Job Description P37902 Confidence 95.85% Date Thu Jan 5 11:57:43 GMT 2012 Rank 53 Aligned Residues 205 % Identity 16% Template c3gxaA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of gna1946 Resolution 2.25 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																												.																																					.	.
Query SS confidence																												.																																					.	.
Query Sequence		D	Y	S	N	A	I	V	E	A	V	K	K	K	L	N	K	P	D	L	Q	V	K	L	I	P	I	.	T	S	Q	N	R	I	P	L	L	Q	N	G	T	F	D	F	E	C	G	S	T	T	N	N	V	E	R	Q	K	Q	A	A	F	S	D	T	.	.	I	F	V	V	G	T	R	L	L	T	K	K	G	G	D
Query Conservation																												.																																					.	.
Alig confidence																												.																																					.	.
Template Conservation
Template Sequence		D	F	G	D	M	V	K	E	Q	I	Q	P	E	L	E	K	K	G	Y	T	V	K	L	V	E	F	T	D	Y	V	R	P	N	L	A	L	A	E	G	E	L	D	I	N	V	F	Q	H	K	P	Y	L	D	D	F	K	K	E	H	N	L	D	I	T	E	V	F	Q	V	P	T	A	P	L	G	L	Y	P	G	K
Template Known Secondary structure										T							T	T	T									S	S	S	S									T	S		S																		T											B								S	S
Template Predicted Secondary structure
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		145	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.																				.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure										.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	K	D	F	A	N	L	K	.	D	K	A	V	V	V	T	S	G	T	T	S	E	V	L	L	N	K	L	N	E	E	Q	K	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	M	R	I	I	S	A	K	D	H	G	D	S	F	R	T	L	E	S	G	R	A	V	A	F	M	M
Query Conservation										.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	S	L	E	E	V	K	D	G	S	T	V	S	A	P	N	D	P	S	N	F	A	R	V	L	V	M	L	D	E	L	G	W	I	K	L	K	D	G	I	N	P	L	T	A	S	K	A	D	I	A	E	N	L	K	N	I	K	I	V	E	L	E	A	A	Q	L	P	R	S	R	A	D	V	D	F	A	V	V
Template Known Secondary structure					G	G	G			T	T								S														T	T	S	S				T	T			G	G	G			G	G	G					T	T									G	G	G					T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	A	L	L	A	G	E	R	A	K	A	K	K	P	D	N	W	E	I	V	G	K	P	Q	S	Q	E	A	Y	G	C	M	L	R	K	D	D	P	Q	F	K	K	L	M	D	D	T	I	A	Q	V	Q	T	S	G	E	A	E	K	W	F	D	K	W	F	K	N	P	I	P	P	K	N
Query Conservation
Alig confidence							.	.																																											.	.	.	.
Template Conservation							.	.																																											.	.	.	.
Template Sequence		N	G	N	Y	A	.	.	I	S	S	G	M	K	L	T	E	A	L	F	Q	E	P	S	F	A	Y	V	N	W	S	A	V	K	T	A	D	K	D	S	Q	W	L	K	D	V	T	E	A	Y	.	.	.	.	N	S	D	A	F	K	A	Y	A	H	K	R	F	E	G	Y	K	S	P	A	A
Template Known Secondary structure							.	.			T	T			G	G	G		S							T	T								G	G	G	T	T											T	.	.	.	.	T	S											S	T	T		B			T	T
Template Predicted Secondary structure							.	.																																											.	.	.	.
Template SS confidence
		213	.	.	.	.			.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.					260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions