Return to main results Retrieve Phyre Job Id

Job DescriptionP37902
Confidence100.00%DateThu Jan 5 11:57:43 GMT 2012
Rank6Aligned Residues230
% Identity16%Templatec3g41A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:amino acid abc transporter, periplasmic amino acid-binding PDBTitle: the structure of cpn0482, the arginine binding protein from the2 periplasm of chlamydia pneumoniae
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   38.40.........50.........60.........70.........80.........90.........100.........110.......
Predicted Secondary structure 
































Query SS confidence 















































































Query Sequence  KNGVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNGTFDFECGSTTNN
Query Conservation    
 
 

     

       
   
  


   
   
                              
         
Alig confidence 








































.......































Template Conservation      
 

     

       
   
   

   
    
.......                      
         
Template Sequence  RNRIWIVGTNATYPPFEYVDAQGEVVGFDIDLAKAISEKLG. . . . . . . KQLEVREFAFDALILNLKKHRIDAILAGMSIT
Template Known Secondary structure 



S
BTTTB
TTS
ST.......


GGGTTSSS
S

B

Template Predicted Secondary structure 















.......












Template SS confidence 















































































   8.10.........20.........30.........40........ .50.........60.........70.........80
 
   118.120.........130.........140.........150.........160.........170.........180.........190.......
Predicted Secondary structure 







































Query SS confidence 















































































Query Sequence  VERQKQAAFSDTIFVVGTRLLTKKGGDIKDFANLKDKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESG
Query Conservation                                                                              
   
Alig confidence 
















































...



























Template Conservation                                                   ...           
            
  
Template Sequence  PSRQKEIALLPYYGDEVQELMVVSKRSLETPVLPLTQYSSVAVQTGTYQ. . . EHYLLSQPGICVRSFDSTLEVIMEVRYG
Template Known Secondary structure  TTS


B
TT

S
S

GGGSS
TTS...TSTT

S
TT
Template Predicted Secondary structure 






























...






Template SS confidence 















































































   81........90.........100.........110.........120......... 130.........140.........150.......
 
   198.200.........210....... ..220.........230.........240.........250.........260.........270......
Predicted Secondary structure 





.

























Query SS confidence 



















.


























































Query Sequence  RAVAFMMDDALLAGERAKAK. KPDNWEIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKNPIPP
Query Conservation    
                 .                      
    
   

 

  
   
    
  



     
Alig confidence 



















.


























































Template Conservation 
 
  
                                     
    
   

  
  
   
    
  

       
Template Sequence  KSPVAVLEPSVGRVVLKDFPNLVATRLELPPECWVLGCGLGVAKDRPEEIQTIQQAITDLKSEGVIQSLTKKWQLSEVAY
Template Known Secondary structure  SSS
GGG
TT

GGG
B


TT
TTTT


TT
Template Predicted Secondary structure 


































Template SS confidence 















































































   158.160.........170.........180.........190.........200.........210.........220.........230.......
 
   277
Predicted Secondary structure 
Query SS confidence 
Query Sequence  K
Query Conservation   
Alig confidence 
Template Conservation 
Template Sequence  R
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 
   500
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions