Job Description P37902 Confidence 99.95% Date Thu Jan 5 11:57:43 GMT 2012 Rank 33 Aligned Residues 222 % Identity 15% Template c2v3tA_ PDB info PDB header:receptor Chain: A: PDB Molecule:glutamate receptor delta-2 subunit synonym PDBTitle: structure of the ligand-binding core of the ionotropic2 glutamate receptor-like glurdelta2 in the apo form Resolution 2.75 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.						.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.									.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.																																										.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.																																										.	.	.	.	.	.	.	.
Query Sequence		G	V	I	V	V	G	H	R	E	S	S	V	P	F	.	.	.	.	.	S	Y	Y	D	N	Q	Q	K	V	V	G	Y	S	Q	D	Y	S	N	A	I	V	E	A	V	K	K	K	L	N	K	P	D	L	Q	V	K	L	I	P	I	T	.	.	.	.	.	.	.	.	S	Q	N	R	I	P	L	L	Q	N	G	T
Query Conservation																.	.	.	.	.																																										.	.	.	.	.	.	.	.
Alig confidence									.							.	.	.	.	.																										.	.	.	.	.	.	.										.	.	.	.	.	.	.	.
Template Conservation									.																																					.	.	.	.	.	.	.
Template Sequence		V	V	L	R	V	V	T	.	V	L	E	E	P	F	V	X	V	S	E	N	V	L	G	K	P	K	K	Y	Q	G	F	S	I	D	V	L	D	A	L	S	N	Y	L	G	.	.	.	.	.	.	.	F	N	Y	E	I	Y	V	A	P	D	H	K	Y	G	S	P	T	W	N	G	L	V	G	E	L	V	F	K	R
Template Known Secondary structure									.			B	T	T	T	B							T	T	S						S														T	.	.	.	.	.	.	.									T	T																	T	T	S
Template Predicted Secondary structure									.																																					.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.								.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180						.
Predicted Secondary structure																																																																												.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.
Query Sequence		F	D	F	E	C	G	S	T	T	N	N	V	E	R	Q	K	Q	A	A	F	S	D	T	I	F	V	V	G	T	R	L	L	T	K	K	G	G	D	I	K	D	F	A	N	L	K	D	K	A	V	V	V	T	S	G	T	T	S	E	V	L	L	N	K	L	N	E	E	Q	K	M	N	M	R	.	.	.	.	.	I
Query Conservation																																																																												.	.	.	.	.
Alig confidence																																																																												.	.	.	.	.
Template Conservation
Template Sequence		A	D	I	G	I	S	A	L	T	I	T	P	D	R	E	N	V	V	D	F	T	T	R	Y	X	D	Y	S	V	G	V	L	L	R	R	S	I	Q	S	L	Q	D	L	S	K	Q	T	D	I	P	Y	G	T	V	L	D	S	A	V	Y	Q	H	V	R	X	K	G	L	N	P	S	X	Y	S	Q	X	W	R	X	I
Template Known Secondary structure			S																S						S															S					T	T			S	S					B	T	T	S											T
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	A	K	D	H	G	D	S	F	R	T	L	E	S	G	R	A	V	A	F	M	M	D	D	A	L	L	A	G	E	R	A	K	A	K	K	P	D	N	W	E	I	V	G	K	P	Q	S	Q	E	A	Y	G	C	M	L	R	K	D	D	P	Q	F	K	K	L	M	D	D	T	I	A	Q	V	Q	T	S	G	E
Query Conservation
Alig confidence																																					.	.	.																									.
Template Conservation																																					.	.	.																									.
Template Sequence		N	N	N	V	L	E	S	Q	A	G	I	Q	K	V	K	Y	G	N	Y	A	F	V	W	D	A	A	V	L	E	Y	V	A	I	N	D	.	.	.	P	D	C	S	F	Y	T	V	T	V	A	D	R	G	Y	G	I	A	L	Q	H	G	S	P	.	Y	R	D	V	F	S	Q	R	I	L	E	L	Q	Q	S	G	D
Template Known Secondary structure						B												S	S																T		.	.	.	T	T										S									T	T		S	.	S															T
Template Predicted Secondary structure																																					.	.	.																									.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.				200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		262	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	K	W	F	D	K	W	F	K	N	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		X	D	I	L	K	H	K	W	W	P	K	N
Template Known Secondary structure										S			S
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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