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Job DescriptionP37902
Confidence100.00%DateThu Jan 5 11:57:43 GMT 2012
Rank8Aligned Residues230
% Identity24%Templatec2v25B_
PDB info PDB header:receptorChain: B: PDB Molecule:major cell-binding factor; PDBTitle: structure of the campylobacter jejuni antigen peb1a, an2 aspartate and glutamate receptor with bound aspartate
Resolution1.49 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   32.......40.........50........ .60.........70.........80.........90.........100.........110
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Query Sequence  TLDKIAKNGVIVVGHRESSVPFSYYDN. QQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNGTFDFE
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Template Sequence  KLESIKSKGQLIVGVKNDVPHYALLDQATGEIKGFEVDVAKLLAKSIL. . . . GDDKKIKLVAVNAKTRGPLLDNGSVDAV
Template Known Secondary structure  T

STTTTTTTS....S
TTS

TTTTTS
S
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   4.....10.........20.........30.........40.........50. ........60.........70.........
 
   111........120.........130.........140.........150.........160.........170.........180.........190
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Query Sequence  CGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGDIKDFANLKDKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDS
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Template Sequence  IATFTITPERKRIYNFSEPYYQDAIGLLVLKEKKYKSLADMKGANIGVAQAATTKKAIGEAAKKIGIDVKFSEFPDYPSI
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SS
B

TT
S
SGGG


SGGGGTT
TT
ST


SS
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   80.........90.........100.........110.........120.........130.........140.........150.........
 
   191........200.........210.........220.........230.........240.........250.........260.........270
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Query Sequence  FRTLESGRAVAFMMDDALLAGERAKAKKPDNWEIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDKWF
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Template Sequence  KAALDAKRVDAFSVDKSILLGYVDDKS. . . . . EILPDSFEPQSYGIVTKKDDPAFAKYVDDFVKEH. . KNEIDALAKKWG
Template Known Secondary structure  TTSSSTTT

TT.....
S


S

TT
T..TT
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   160.........170.........180...... ...190.........200.........210.........220 .........230..
 
   271.
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Query Sequence  KN
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Template Sequence  LD
Template Known Secondary structure 

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   233.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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