Job Description P37902 Confidence 92.33% Date Thu Jan 5 11:57:43 GMT 2012 Rank 62 Aligned Residues 157 % Identity 15% Template c2qpqC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:protein bug27; PDBTitle: structure of bug27 from bordetella pertussis Resolution 1.92 Å

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		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.							.	.	.	.	.	.	.				.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																								.	.	.	.	.	.								.	.	.
Query SS confidence																								.	.	.	.	.	.								.	.	.
Query Sequence		I	F	V	V	G	T	R	L	L	T	K	K	G	G	D	I	K	D	F	A	N	L	.	.	.	.	.	.	K	D	K	A	V	V	V	.	.	.	T	S	G	T	T	S	E	V	L	L	N	K	L	N	E	E	Q	K	M	N	M	R	I	I	S	A	K	D	H	G	D	S	F	R	T	L	E	S	G	R	A	V
Query Conservation																								.	.	.	.	.	.								.	.	.
Alig confidence																								.	.	.	.	.	.								.	.	.
Template Conservation
Template Sequence		V	A	Y	V	P	S	V	F	V	V	P	A	G	S	K	Y	K	T	L	G	E	L	M	A	A	A	K	Q	T	N	T	Q	V	T	Y	G	S	C	G	N	G	T	P	Q	H	L	A	G	E	L	L	N	V	S	A	K	T	H	M	V	H	V	P	Y	K	G	C	G	P	A	L	N	D	V	L	G	S	Q	I	G
Template Known Secondary structure													T	T		S			S								T		S	S	S								S	S	T	T	S														T									S	S										T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.																			.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query Sequence		A	F	M	M	D	D	A	L	L	A	G	E	R	A	K	A	K	K	P	D	N	W	E	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	P	Q	S	Q	E	A	Y	G	C	M	L	R	K	D	.	D	P	Q	F	K	K	L	M	D	D	T	I	A	Q	V	Q	T	S	G	E
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation
Template Sequence		L	A	V	V	T	A	S	S	A	I	P	F	I	K	A	G	K	L	Q	A	L	A	V	T	S	K	E	R	S	A	L	L	P	E	V	P	T	V	A	E	Q	G	V	A	G	Y	E	L	N	Q	W	H	G	L	L	V	P	G	A	T	P	M	A	V	R	Q	K	L	Y	D	G	I	A	K	V	M	Q	R	D	D
Template Known Secondary structure																T	T	S							S	S	S	S			T	T		T	T	S		B	S	G	G	G	T		T	T													T	T	S
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	K	W	F	D	K	W	F	K	N	P	I	P	P	K	N	L	N	M	N	F	E	L	S	D	E	M	K	A	L	F	K
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.
Template Sequence		V	Q	K	K	L	A	D	L	.	.	.	.	.	.	.	.	G	Y	S	T	A	S	D	G	P	E	V	F	Q	K	M	V	E
Template Known Secondary structure										.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.
Template SS confidence
		259	260	.	.	.	.	.	.									.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions