Job Description P37902 Confidence 92.35% Date Thu Jan 5 11:57:43 GMT 2012 Rank 61 Aligned Residues 200 % Identity 12% Template c2g29A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein nrta; PDBTitle: crystal structure of the periplasmic nitrate-binding2 protein nrta from synechocystis pcc 6803 Resolution 1.50 Å

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		73	.	.	.	.	.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.						.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																.										.	.	.	.	.																																																			.
Query SS confidence																.										.	.	.	.	.																																																			.
Query Sequence		I	V	E	A	V	K	K	K	L	N	K	P	D	L	.	Q	V	K	L	I	P	I	T	S	.	.	.	.	.	Q	N	R	I	P	L	L	Q	N	G	T	F	D	F	E	C	G	S	T	T	N	N	V	E	R	Q	K	Q	A	A	F	S	D	T	I	F	V	V	G	T	R	L	L	T	K	K	G	G	D	I	.
Query Conservation																.										.	.	.	.	.																																																			.
Alig confidence								.								.										.	.	.	.	.																																																			.
Template Conservation								.
Template Sequence		I	A	K	E	K	G	.	F	Y	A	K	Y	G	M	P	D	V	E	V	L	K	Q	A	S	W	G	T	T	R	D	N	L	V	L	G	S	A	S	G	G	I	D	G	A	H	I	L	T	P	M	P	Y	L	I	T	M	G	T	V	T	D	G	K	P	T	P	M	Y	I	L	A	R	L	N	V	N	G	Q	G	I
Template Known Secondary structure						T	T	.					T	T		T	T							S													G	G	G	T	S		S						T										T	T	S	S	S													B	S
Template Predicted Secondary structure								.
Template SS confidence
		79	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
																					146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.					.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	D	F	A	N	L	K	D	K	A	V	V	V	T	S	G	T	T	S	E	V	L	L	N	K	L	N	E	E	Q	K	.	.	.	.	M	N	M	R	I	I	S	A	K	D	H	G	D	S	F	R	T	L	E	S	G	R	A	V	A	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template Conservation
Template Sequence		Q	L	G	N	N	Y	K	D	L	K	V	G	T	D	A	A	P	L	K	E	A	F	A	K	V	T	D	P	K	V	A	M	T	F	P	G	G	T	H	D	M	W	I	R	Y	W	L	A	A	G	G	M	E	P	G	K	D	F	S	T	I	V	V	P	P	A	Q	M	V	A	N	V	K	V	N	A	M	E	S	F
Template Known Secondary structure					G	G	G	G	G	G				S			T	T							T	S	S	S						S	S	T	T	S													T	T			B	T	T	T	B							G	G	G							T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.					240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.								.	.	.	260	.	.	.	.	.	.	.			.	.
Predicted Secondary structure																																							.	.	.	.																		.	.	.	.	.	.	.												.	.
Query SS confidence																																							.	.	.	.																		.	.	.	.	.	.	.												.	.
Query Sequence		M	M	D	D	A	L	L	A	G	E	R	A	K	A	K	K	P	D	N	W	E	I	V	G	K	P	Q	S	Q	E	A	Y	G	C	M	L	R	.	.	.	.	K	D	D	P	Q	F	K	K	L	M	D	D	T	I	A	Q	V	.	.	.	.	.	.	.	Q	T	S	G	E	A	E	K	W	F	D	.	.	K	W
Query Conservation																																							.	.	.	.																		.	.	.	.	.	.	.												.	.
Alig confidence																																							.	.	.	.																		.	.	.	.	.	.	.												.	.
Template Conservation
Template Sequence		C	V	G	E	P	W	P	L	Q	T	V	N	Q	G	V	G	Y	Q	A	L	T	T	G	Q	L	W	K	D	H	P	E	K	A	F	G	M	R	A	D	W	V	D	Q	N	P	K	A	A	K	A	L	L	M	A	V	M	E	A	Q	Q	W	C	D	Q	A	E	N	K	E	E	M	C	Q	I	L	S	K	R	E	W
Template Known Secondary structure					T	T									T	S							G	G	G	T	B	T	T		B																																			G	G	G										S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	N	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	K	V	P
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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