Job Description P37902 Confidence 95.64% Date Thu Jan 5 11:57:43 GMT 2012 Rank 54 Aligned Residues 158 % Identity 13% Template c2dvzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: structure of a periplasmic transporter Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.										.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.
Query Sequence		I	F	V	V	G	T	R	L	L	T	K	K	G	G	D	I	K	D	F	A	N	L	.	.	.	.	.	.	.	.	.	K	D	K	A	V	V	V	T	S	G	T	T	S	E	V	L	L	N	K	L	N	E	E	Q	K	M	N	M	R	I	I	S	A	K	D	H	G	D	S	F	R	T	L	E	S	G	R	A	V
Query Conservation																								.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	A	N	T	A	N	V	V	A	V	N	P	K	F	P	A	K	D	F	K	G	F	L	E	E	L	K	K	N	P	G	K	Y	S	Y	G	S	S	G	T	C	G	V	L	H	L	X	G	E	S	F	K	X	A	T	G	T	D	I	V	H	V	P	Y	K	G	S	G	P	A	V	A	D	A	V	G	G	Q	I	E
Template Known Secondary structure													T	T	S	S		S	S										T	S	T	T	T						S		T	T	S														T									S	S											T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.																			.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query Sequence		A	F	M	M	D	D	A	L	L	A	G	E	R	A	K	A	K	K	P	D	N	W	E	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	P	Q	S	Q	E	A	Y	G	C	M	L	R	K	D	.	D	P	Q	F	K	K	L	M	D	D	T	I	A	Q	V	Q	T	S	G	E
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation
Template Sequence		L	I	F	D	N	L	P	S	S	X	P	Q	I	Q	A	G	K	L	R	A	X	A	I	A	W	P	T	R	I	D	A	I	K	D	V	P	T	F	A	D	A	G	F	P	V	L	N	Q	P	V	W	Y	G	L	L	A	P	K	G	T	P	X	D	V	V	N	K	L	R	D	A	A	V	V	A	L	K	D	P	K
Template Known Secondary structure																T	T	S	S							S	S	S			G	G	G	T	T	S		B	T	T	T	T	T		G	G	G												T	T																		T
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	K	W	F	D	K	W	F	K	N	P	I	P	P	K	N	L	N	M	N	F	E	L	S	D	E	M	K	A	L	F	K	E
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.
Template Sequence		V	I	K	A	L	D	D	Q	.	.	.	.	.	.	.	.	G	S	A	P	S	G	N	T	P	E	E	F	A	K	E	I	K	E
Template Known Secondary structure										.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.
Template SS confidence
		272	.	.	.	.	.	.	.									280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions