Job Description P0AA60 Confidence 3.44% Date Thu Jan 5 11:12:01 GMT 2012 Rank 15 Aligned Residues 132 % Identity 10% Template c3p5nA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:riboflavin uptake protein; PDBTitle: structure and mechanism of the s component of a bacterial ecf2 transporter Resolution 3.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	D	S	L	L	I	L	A	G	A	L	I	A	Q	G	V	M	D	F	L	P	T	I	A	I	L	T	A	A	A	S	L	G	C	W	L	S	Y	I	Q	G	R	W	L	G	N	T	K	T	V	K	G	W	L	A	Q	L	P	A	K	Y	H	Q	R	A	T	C	M	F	D	R	H	G	L	L	A	L	L	A
Query Conservation
Alig confidence														.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	S	D	V	P	S	L	L	A	T	F	T	.	.	.	.	.	F	G	P	V	A	G	I	I	V	A	L	V	K	N	L	L	N	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	F	S	M	G	D	P	V	G	P	F	A
Template Known Secondary structure		G	G	G								T	T	.	.	.	.	.	S																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	T		S	S
Template Predicted Secondary structure														.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.						.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.																																		.	.	.	.	80	.	.	.	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	F	L	A	F	V	R	T	L	L	P	T	M	A	G	I	S	G	L	P	N	R	R	F	Q	F	F	N	W	L	S	G	L	L	W	V	S	V	V	T	S	F	G	Y	A	L	S	M	I	P	F	V	K	R	H	E	D	Q	V	M	T	F	L	M	I	L	P	I	A	L	L	T	A	G	L	L	G	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	F	L	A	G	A	S	F	L	L	T	A	Y	A	I	Y	K	N	K	R	S	T	K	S	L	I	T	G	L	I	I	A	T	I	V	M	T	I	V	L	S	I	L	N	Y	F	V	L	L	P	L	Y	G	M	K	V	I	I	V	S	G	I	I	P	F	N	I	I	K	G	I	V	I	S	I	V	F	I	L	L
Template Known Secondary structure																		S	S	S		S																								T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	V	I	K	K	K	Y	C	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	R	R	L	A	N	F	L	K	R
Template Known Secondary structure				T	T					T
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions