Job Description P0ACS9 Confidence 99.81% Date Thu Jan 5 11:18:56 GMT 2012 Rank 59 Aligned Residues 193 % Identity 15% Template c2fbqA_ PDB info PDB header:transcription Chain: A: PDB Molecule:probable transcriptional regulator; PDBTitle: the crystal structure of transcriptional regulator pa3006 Resolution 1.80 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.								80	.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.
Query Sequence		A	Q	E	T	R	Q	H	I	L	D	V	A	L	R	L	F	S	Q	Q	G	V	S	S	T	S	L	G	E	I	A	K	A	A	G	V	T	R	G	A	I	Y	W	H	F	K	D	K	S	D	L	F	S	E	I	W	E	L	S	E	S	N	I	G	E	L	E	L	E	Y	Q	A	.	.	.	.	.	.	.	K	F
Query Conservation																																																																									.	.	.	.	.	.	.
Alig confidence																																																																									.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	S	E	T	V	E	R	I	L	D	A	A	E	Q	L	F	A	E	K	G	F	A	E	T	S	L	R	L	I	T	S	K	A	G	V	N	L	A	A	V	N	Y	H	F	G	S	K	K	A	L	I	Q	A	V	F	S	R	F	L	G	P	F	C	A	S	L	E	K	E	L	D	R	R	Q	A	K	P	E	A	Q
Template Known Secondary structure																						S	T	T											T	S									T		S																															T	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	D	P	L	S	V	L	R	E	I	L	I	H	V	L	E	S	T	V	T	E	E	R	R	R	L	L	M	E	I	I	F	H	K	C	E	F	V	G	E	M	A	V	V	Q	Q	A	Q	R	N	L	C	L	E	S	Y	D	R	I	E	Q	T	L	K	H	C	I	E	A	K	M	L	P	A	D	L	M	T	R
Query Conservation
Alig confidence																															.																																						.	.	.	.	.	.
Template Conservation																															.																																						.	.	.	.	.	.
Template Sequence		H	A	T	L	E	D	L	L	H	L	L	V	S	Q	A	M	A	V	K	P	R	S	G	N	D	L	S	I	F	.	M	R	L	L	G	L	A	F	S	Q	S	Q	G	H	L	R	K	Y	L	E	E	V	Y	G	K	V	F	R	R	Y	M	L	L	V	N	E	A	.	.	.	.	.	.	A	P	K	L	P	P	I
Template Known Secondary structure																			S			S	S	S							.										T	T																											.	.	.	.	.	.	S
Template Predicted Secondary structure																															.																																						.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.							.	150	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.												180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	A	A	I	I	M	R	G	Y	I	S	G	L	M	E	N	W	L	.	.	.	.	.	.	.	.	.	.	.	F	A	P	Q	S	F	D	L	K	K	E	A	R	D	Y	V	A	I	L	L	E	M	Y	L	L	C	P	T	L
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	L	F	W	R	V	H	F	M	L	G	A	A	A	F	S	M	S	G	I	K	A	L	R	A	M	A	E	T	D	F	G	V	N	T	S	T	E	Q	V	M	H	L	M	V	P	F	F	A	A	G	M	R	A	E	S	G	I
Template Known Secondary structure																				T													S																						S			S
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions