Job Description P0ABQ2 Confidence 99.96% Date Thu Jan 5 11:16:04 GMT 2012 Rank 30 Aligned Residues 262 % Identity 18% Template c3g79A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ndp-n-acetyl-d-galactosaminuronic acid dehydrogenase; PDBTitle: crystal structure of ndp-n-acetyl-d-galactosaminuronic acid2 dehydrogenase from methanosarcina mazei go1 Resolution 2.40 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.			.	.	.	.	.	.	30	.	.	.	.	.																										.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.
Predicted Secondary structure																									.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	V	G	F	I	G	L	G	I	M	G	K	P	M	S	K	N	L	L	K	A	G	.	.	Y	S	L	V	V	A	D	R	N	P	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	D	V	I	A	A	G	A	E	T	A	S	T	A	K	A	I
Query Conservation																									.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	K	I	G	V	L	G	M	G	Y	V	G	I	P	A	A	V	L	F	A	D	A	P	C	F	E	K	V	L	G	F	Q	R	N	S	K	S	S	G	Y	K	I	E	M	L	N	R	G	E	S	P	L	K	G	E	E	P	G	L	E	E	L	I	G	K	V	V	K	A	G	K	F	E	C	T	P	D	F	S	R
Template Known Secondary structure										S	T	T											S	T	T												T	T	T	T	T						T	T	T				S	S			G	G	G											T	T						S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		54	.	.	.	.	.	60	.	.	.	.	.	.	.									.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.																																																					.	.	.
Query SS confidence																.	.	.	.	.	.	.	.																																																					.	.	.
Query Sequence		A	E	Q	C	D	V	I	I	T	M	L	P	N	S	.	.	.	.	.	.	.	.	P	H	V	K	E	V	A	L	G	E	N	G	I	I	E	G	A	K	P	G	T	V	L	I	D	M	S	S	I	A	P	L	A	S	R	E	I	S	E	A	L	K	A	K	G	I	D	M	L	D	A	P	.	.	.	V	S	G
Query Conservation																.	.	.	.	.	.	.	.																																																					.	.	.
Alig confidence																.	.	.	.	.	.	.	.																																																					.	.	.
Template Conservation
Template Sequence		I	S	E	L	D	A	V	T	L	A	I	Q	T	P	F	A	N	P	K	D	L	E	P	D	F	S	A	L	I	D	G	I	R	N	V	G	K	Y	L	K	P	G	M	L	V	V	L	E	S	T	I	T	P	G	T	T	E	G	M	A	K	Q	I	L	E	E	E	S	G	L	K	A	G	E	D	F	A	L	A	H
Template Known Secondary structure		G	G	G		S												S	S			S	S																			T	T							S				T	T	T	T	T	T														B	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.									.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.																								.
Query SS confidence													.	.	.	.	.	.	.	.																								.
Query Sequence		G	E	P	K	A	I	D	G	T	L	S	.	.	.	.	.	.	.	.	V	M	V	G	G	D	K	A	I	F	D	K	Y	Y	D	L	M	K	A	M	A	G	S	.	V	V	H	T	G	E	I	G	A	G	N	V	T	K	L	A	N	Q	V	I	V	A	L	N	I	A	A	M	S	E	A	L	T	L	A	T	K
Query Conservation													.	.	.	.	.	.	.	.																								.
Alig confidence													.	.	.	.	.	.	.	.																								.
Template Conservation
Template Sequence		A	P	E	R	V	M	V	G	R	L	L	K	N	I	R	E	H	D	R	I	V	G	G	I	D	E	A	S	T	K	R	A	V	E	L	Y	S	P	V	L	T	V	G	Q	V	I	P	M	S	A	T	A	A	E	V	T	K	T	A	E	N	T	F	R	D	L	Q	I	A	A	I	N	Q	L	A	L	Y	C	E	A
Template Known Secondary structure								T	T	S								S							S	S												G	G	G		S	S
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.								.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.
Query Sequence		A	G	V	N	P	D	L	V	Y	Q	A	I	R	G	G	L	A	G	S	T	V	L	D	A	K	A	P	M	V	M	D	R	N	F	K	P	G	F	R	I	D	L	H	I	K	D	L	A	N	A	L	D	T	S	H	G	V	G	A	Q	L	.	.	.	.	.	.	.	P	L	T	A	A	V	M	E	M	M	Q	A
Query Conservation																																																															.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.																														.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.
Template Sequence		M	G	I	N	V	Y	D	V	R	T	G	V	D	S	L	K	G	E	G	I	T	R	A	V	L	.	.	.	.	.	.	.	W	P	G	A	G	V	G	G	H	C	L	T	K	D	T	Y	H	L	E	R	G	V	K	I	G	R	G	E	L	D	Y	P	E	G	A	D	S	I	Y	V	L	A	R	K	V	N	D	F
Template Known Secondary structure		T	T												T	S			S	S	S						.	.	.	.	.	.	.				S				S	S														T	T	S	S							S	S
Template Predicted Secondary structure																											.	.	.	.	.	.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.								.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		267	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	P	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		332	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions