Job Description P0ABQ2 Confidence 100.00% Date Thu Jan 5 11:16:04 GMT 2012 Rank 8 Aligned Residues 284 % Identity 29% Template c2uyyD_ PDB info PDB header:cytokine Chain: D: PDB Molecule:n-pac protein; PDBTitle: structure of the cytokine-like nuclear factor n-pac Resolution 2.5 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	V	G	F	I	G	L	G	I	M	G	K	P	M	S	K	N	L	L	K	A	G	Y	S	L	V	V	A	D	R	N	P	E	A	I	A	D	V	I	A	A	G	A	E	T	A	S	T	A	K	A	I	A	E	Q	C	D	V	I	I	T	M	L	P	N	S	P	H	V	K	E	V	A	L	G	E	N	G	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	K	I	G	F	L	G	L	G	L	M	G	S	G	I	V	S	N	L	L	K	M	G	H	T	V	T	V	W	N	R	T	A	E	K	C	D	L	F	I	Q	E	G	A	R	L	G	R	T	P	A	E	V	V	S	T	C	D	I	T	F	A	C	V	S	D	P	K	A	A	K	D	L	V	L	G	P	S	G	V
Template Known Secondary structure		S								S													T	T								S	S	G	G	G	G						T	T					S										S							S	S										S	T	T		G
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	G	A	K	P	G	T	V	L	I	D	M	S	S	I	A	P	L	A	S	R	E	I	S	E	A	L	K	A	K	G	I	D	M	L	D	A	P	V	S	G	G	E	P	K	A	I	D	G	T	L	S	V	M	V	G	G	D	K	A	I	F	D	K	Y	Y	D	L	M	K	A	M	A	G	S	V	V	H	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q	G	I	R	P	G	K	C	Y	V	D	M	S	T	V	D	A	D	T	V	T	E	L	A	Q	V	I	V	S	R	G	G	R	F	L	E	A	P	V	S	G	N	Q	Q	L	S	N	D	G	M	L	V	I	L	A	A	G	D	R	G	L	Y	E	D	C	S	S	C	F	Q	A	M	G	K	T	S	F	F	L
Template Known Secondary structure		G	G	G			T	T							S																	T	T										S								T																T
Template Predicted Secondary structure
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	I	G	A	G	N	V	T	K	L	A	N	Q	V	I	V	A	L	N	I	A	A	M	S	E	A	L	T	L	A	T	K	A	G	V	N	P	D	L	V	Y	Q	A	I	R	G	G	L	A	G	S	T	V	L	D	A	K	A	P	M	V	M	D	R	N	F	K	P	G	F	R	I	D	L	H	I	K	D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	V	G	N	A	A	K	M	M	L	I	V	N	M	V	Q	G	S	F	M	A	T	I	A	E	G	L	T	L	A	Q	V	T	G	Q	S	Q	Q	T	L	L	D	I	L	N	Q	G	Q	L	A	S	I	F	L	D	Q	K	C	Q	N	I	L	Q	G	N	F	K	P	D	F	Y	L	K	Y	I	Q	K	D	L
Template Known Secondary structure		S	S	T	T																														T	T													S	T	T															T					S	S	B
Template Predicted Secondary structure
Template SS confidence
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	A	L	D	T	S	H	G	V	G	A	Q	L	P	L	T	A	A	V	M	E	M	M	Q	A	L	R	A	D	G	L	G	T	A	D	H	S	A	L	A	C	Y	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	A	I	A	L	G	D	A	V	N	H	P	T	P	M	A	A	A	A	N	E	V	Y	K	R	A	K	A	L	D	Q	S	D	N	D	M	S	A	V	Y	R	A	Y
Template Known Secondary structure											T	T																			T	T		T	T	S	B	G	G	G	G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		508	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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