Job Description P0ABQ2 Confidence 99.87% Date Thu Jan 5 11:16:04 GMT 2012 Rank 63 Aligned Residues 272 % Identity 12% Template c1yj8C_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:glycerol-3-phosphate dehydrogenase; PDBTitle: initial structural analysis of plasmodium falciparum glycerol-3-2 phosphate dehydrogenase Resolution 2.85 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.								.	.	.	.	.	.	30	.	.			.	.	.	.	.	.	.	40	.	.	.															.	.	.	.	.	.	50	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.										.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.										.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	V	G	F	I	G	L	G	I	M	G	K	P	M	S	K	N	L	L	K	A	G	.	.	.	.	.	.	.	Y	S	L	V	V	A	D	R	N	.	.	P	E	A	I	A	D	V	I	A	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	T	A	S	T	A	K	A	I	A	E	Q	C
Query Conservation																									.	.	.	.	.	.	.										.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.										.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	I	S	I	L	G	S	G	N	W	A	S	A	I	S	K	V	V	G	T	N	A	K	N	N	Y	L	F	E	N	E	V	R	M	W	I	R	D	E	F	E	R	M	V	D	I	I	N	N	K	H	E	N	T	K	Y	L	K	G	V	P	L	P	H	N	I	V	A	H	S	D	L	A	S	V	I	N	D	A
Template Known Secondary structure		B								S																		T	T	B		S								S														B		T	T	T	S	T	T		B			T	T					S	S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.							.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																												.									.	.	.	.	.	.
Query SS confidence																												.									.	.	.	.	.	.
Query Sequence		D	V	I	I	T	M	L	P	N	S	P	H	V	K	E	V	A	L	G	E	N	G	I	I	E	G	.	A	K	P	G	T	V	L	I	.	.	.	.	.	.	D	M	S	S	I	A	P	L	A	S	R	E	I	S	E	A	L	K	A	K	G	I	D	M	L	D	A	P	V	S	G	G	E	P	K	A	I	D	G
Query Conservation																												.									.	.	.	.	.	.
Alig confidence												.	.	.	.													.									.	.	.	.	.	.
Template Conservation												.	.	.	.
Template Sequence		D	L	L	I	F	I	V	P	C	Q	.	.	.	.	Y	L	E	S	V	L	A	S	I	K	E	I	K	I	A	S	H	A	K	A	I	S	L	T	K	G	F	I	V	K	K	N	Q	M	K	L	C	S	N	Y	I	S	D	F	L	N	I	P	C	S	A	L	S	G	A	N	I	A	M	D	V	A	M	E	N	F
Template Known Secondary structure		S										.	.	.	.										T						T	T									S					T	T													S	S	S								S								T	T
Template Predicted Secondary structure												.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.					.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170																		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	L	S	V	M	V	G	G	D	K	A	I	F	D	K	Y	Y	D	L	M	K	A	M	A	G	S	V	V	H	T	G	E	I	G	A	G	N	V	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	N	Q	V	I	V	A	L	N	I	A	A	M	S	E	A	L	T	L	A	T	K
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	E	A	T	I	G	G	N	D	K	D	S	L	V	I	W	Q	R	V	F	D	L	P	Y	F	K	I	N	C	V	N	E	T	I	E	V	E	I	C	G	A	L	K	N	I	I	T	L	A	C	G	F	C	D	G	L	N	L	P	T	N	S	K	S	A	I	I	R	N	G	I	N	E	M	I	L	F	G	K	V
Template Known Secondary structure									S														B	T	T							S		S																							T	T
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.																		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Query Sequence		A	G	V	N	P	D	L	V	Y	Q	A	I	R	G	G	L	A	G	S	T	V	L	D	A	K	A	P	M	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	D	R	N	F	K	P	G	F	R	I	D	L	H	I	K	D	L	A	N	A	L	D	T	S	H	G	V	G	A	Q	L	.	.
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																		.	.
Template Conservation																																																														.
Template Sequence		F	F	Q	K	F	N	E	N	I	L	L	E	S	C	G	F	A	D	I	I	T	S	F	L	A	G	R	N	A	K	C	S	A	E	F	I	K	S	T	P	K	K	T	W	E	E	L	E	N	E	I	L	K	G	Q	K	L	Q	G	T	.	V	T	L	K	Y	V	Y	H	M	I	K	E	K	N	M	T	N	E	F
Template Known Secondary structure			S	S				G	G	G	G	G	S	T	T	T										S	S	S	S										T	T	T	T										T	T	T	T							.													T	T		T	T	T
Template Predicted Secondary structure																																																														.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	T	A	A	V	M	E	M	M	Q	A	L	R	A	D	G	L	G	T	A	D	H	S	A	L	A	C	Y	Y
Query Conservation
Alig confidence												.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.
Template Sequence		P	L	F	T	V	L	H	K	I	S	.	.	.	.	.	.	.	F	E	N	E	D	P	S	S	L	L	K	T	F
Template Known Secondary structure												.	.	.	.	.	.	.		S				T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.
Template SS confidence
		343	.	.	.	.	.	.	350	.	.								.	.	.	.	.	.	.	360	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions