Job Description P0ABQ2 Confidence 99.96% Date Thu Jan 5 11:16:04 GMT 2012 Rank 28 Aligned Residues 257 % Identity 17% Template c1dliA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:udp-glucose dehydrogenase; PDBTitle: the first structure of udp-glucose dehydrogenase (udpgdh) reveals the2 catalytic residues necessary for the two-fold oxidation Resolution 2.31 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.																			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	V	G	F	I	G	L	G	I	M	G	K	P	M	S	K	N	L	L	K	A	G	Y	S	L	V	V	A	D	R	N	P	E	A	I	A	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	A	G	A	E	T	A	S	T	A	K	A	I	A	E	Q	C	D	V	I	I	T
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.
Template Sequence		M	K	I	A	V	A	G	S	G	Y	V	G	L	S	L	G	V	L	L	S	.	L	Q	N	E	V	T	I	V	D	I	L	P	S	K	V	D	K	I	N	N	G	L	S	P	I	Q	D	E	Y	I	E	Y	Y	L	K	S	K	Q	L	S	I	K	A	T	L	D	S	K	A	A	Y	K	E	A	E	L	V	I	I
Template Known Secondary structure										S											T	.	T	T	S							S										T	T			S	S												S								S										S
Template Predicted Secondary structure																						.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		63	.	.	.	.	.	.	70	.							.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.
Query Sequence		M	L	P	N	S	P	H	V	K	.	.	.	.	.	.	E	V	A	L	G	E	N	G	I	I	E	G	A	K	P	G	T	V	L	I	D	M	S	S	I	A	P	L	A	S	R	E	I	S	E	A	L	K	A	K	G	I	D	M	L	D	A	P	V	S	G	G	E	P	K	A	I	D	G	T	L	S	V	M	V
Query Conservation											.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.
Template Conservation
Template Sequence		A	T	P	T	N	Y	N	S	R	I	N	Y	F	D	T	Q	H	V	E	T	V	I	K	E	V	L	S	V	N	S	H	A	T	L	I	I	K	S	T	I	P	I	G	F	I	T	E	M	R	Q	K	F	Q	T	D	R	I	I	F	S	P	E	F	L	R	E	S	K	A	L	Y	D	N	L	Y	P	S	R	I	I
Template Known Secondary structure									T	T	T	T																			S	S							S				T	T										T		S											T	T	S	T	T					S		S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		137	.	.	140	.									.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.				.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.																	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.																	.	.	.
Query Sequence		G	G	D	K	A	.	.	.	.	.	.	.	.	I	F	D	K	Y	Y	D	L	M	K	A	M	A	G	S	V	.	.	.	V	H	T	G	E	I	G	A	G	N	V	T	K	L	A	N	Q	V	I	V	A	L	N	I	A	A	M	S	E	A	L	T	L	A	T	K	A	G	V	N	P	D	L	V	Y	Q	A	I
Query Conservation							.	.	.	.	.	.	.	.																	.	.	.
Alig confidence							.	.	.	.	.	.	.	.																	.	.	.
Template Conservation
Template Sequence		V	S	C	E	E	N	D	S	P	K	V	K	A	D	A	E	K	F	A	L	L	L	K	S	A	A	K	K	N	N	V	P	V	L	I	M	G	A	S	E	A	E	A	V	K	L	F	A	N	T	Y	L	A	L	R	V	A	Y	F	N	E	L	D	T	Y	A	E	S	R	K	L	N	S	H	M	I	I	Q	G	I
Template Known Secondary structure						T	T	S																				S	S	S																																								T	T
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	G	L	A	G	S	T	V	L	D	A	K	A	P	M	V	M	D	R	N	F	K	P	G	F	R	I	D	L	H	I	K	D	L	A	N	A	L	D	T	S	H	G	V	G	A	Q	L	P	L	T	A	A	V	M	E	M	M	Q	A	L	R	A
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.																		.	.
Template Conservation															.	.	.	.	.	.	.	.	.																		.	.
Template Sequence		S	Y	D	D	R	I	G	M	H	Y	N	N	P	.	.	.	.	.	.	.	.	.	S	F	G	Y	G	G	Y	C	L	P	K	D	T	K	Q	L	L	.	.	A	N	Y	N	N	I	P	Q	T	L	I	E	A	I	V	S	S	N	N	V	R	K	S
Template Known Secondary structure			T	S	T	T	T		S	S	S				.	.	.	.	.	.	.	.	.		S				S	S											.	.			T	T	T	S	S		S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.																		.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.										.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.			270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions