Job Description P52647 Confidence 98.62% Date Thu Jan 5 12:05:59 GMT 2012 Rank 109 Aligned Residues 206 % Identity 17% Template c2yicC_ PDB info PDB header:lyase Chain: C: PDB Molecule:2-oxoglutarate decarboxylase; PDBTitle: crystal structure of the suca domain of mycobacterium smegmatis2 alpha-ketoglutarate decarboxylase (triclinic form) Resolution 1.96 Å

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		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.									80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.					.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.																			.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.																			.	.	.	.
Query Sequence		S	E	A	G	A	I	A	T	V	H	G	A	L	Q	T	G	A	L	S	T	S	.	.	.	.	.	.	.	.	F	T	S	S	Q	G	L	L	L	M	I	P	T	L	Y	K	L	A	.	.	.	.	G	E	L	T	P	F	V	L	H	V	A	A	R	T	V	A	T	H	A	L	S	I	F	G	D	H	S	D	V
Query Conservation																							.	.	.	.	.	.	.	.																			.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.				.	.														.	.	.	.											.	.	.	.	.
Template Conservation																																		.	.																												.	.	.	.	.
Template Sequence		S	E	F	A	A	V	G	F	E	Y	G	Y	S	V	G	N	P	D	A	M	V	L	W	E	A	Q	F	G	D	F	V	N	.	.	G	A	Q	S	I	I	D	E	F	I	S	S	G	E	A	K	W	G	Q	L	S	D	V	V	L	L	L	.	.	.	.	.	P	H	G	H	E	G	Q	G	P	D	H	T	S	G
Template Known Secondary structure			S															T	T	S							S	S	G	G	G	G	G	.	.	G	G							T	T	T	T																.	.	.	.	.					S	S	S		T	T	S	S
Template Predicted Secondary structure																																		.	.																												.	.	.	.	.
Template SS confidence
		951	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.			.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.						1010	.	.	.	.	.	.	.	.	.	1020	.	.	.
		127	.	.	130	.							.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure							.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.
Query Sequence		M	A	V	R	Q	.	.	.	.	.	.	T	G	C	A	M	L	C	A	A	N	V	Q	E	A	Q	D	F	A	L	I	S	Q	I	A	T	L	K	S	R	V	P	F	I	H	F	F	D	G	F	R	T	S	H	E	I	N	K	I	V	P	L	A	D	D	T	I	L	D	L	M	P	Q	V	E	I	D	A	H	R
Query Conservation							.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.																						.	.																					.
Template Conservation																																		.	.																					.
Template Sequence		R	I	E	R	F	L	Q	L	W	A	E	G	S	M	T	I	A	M	P	S	T	P	A	N	Y	F	H	L	L	R	R	H	.	.	G	K	D	G	I	Q	R	P	L	I	V	F	T	P	K	S	M	L	R	N	.	K	A	A	V	S	D	I	R	D	F	T	E	S	K	F	R	S	V	L	E	E	P	M	Y	T
Template Known Secondary structure												T	T	S								S												.	.			S	S											S	G	G	G	G		.	T	T	S		B							S					S
Template Predicted Secondary structure																																		.	.																					.
Template SS confidence
		1024	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.			.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.		.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	A	L	N	P	E	H	P	V	I	R	G	T	S	A	N	P	D	T	Y	F	Q	S	R	E	A	T	N	P	W	Y	N	A	V	Y	D	H	V	E	Q	A	M	N	D	F	S	A	A	T	G	R	Q	Y	Q	P	F	E	Y	Y	G	H	P	Q	A	E	R	V	I	I	L	M	G	S	A	I	G	T	C	E
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	G	E	G	D	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	K	V	T	R	L	L	L	T	S	G	K	I	Y	Y	E	L	A
Template Known Secondary structure		T	S	S			G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G									S	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1101	.	.	.	.	.																																																									.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.				.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																																					.	.	.
Query SS confidence																																					.	.	.
Query Sequence		E	V	V	D	E	L	L	T	R	G	E	K	V	G	V	L	K	V	R	L	Y	R	P	F	S	A	K	H	L	L	Q	A	L	P	G	.	.	.	S	V	R	S	V	A	V	L	D	R	T	K	E	P	G	A	Q
Query Conservation																																					.	.	.
Alig confidence									.	.																											.	.	.
Template Conservation									.	.
Template Sequence		A	R	K	A	K	E	N	.	.	R	E	D	V	A	I	V	R	I	E	Q	L	A	P	L	P	R	R	R	L	A	E	T	L	D	R	Y	P	N	V	K	E	K	F	W	V	Q	E	E	P	A	N	Q	G	A	W
Template Known Secondary structure								T	.	.		T	T											S											T	T		T	T												T	T	S	T	T
Template Predicted Secondary structure									.	.
Template SS confidence
		1125	.	.	.	.	1130	.			.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions