Job Description P52647 Confidence 99.67% Date Thu Jan 5 12:05:59 GMT 2012 Rank 26 Aligned Residues 513 % Identity 10% Template c2x7jA_ PDB info PDB header:transferase Chain: A: PDB Molecule:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene PDBTitle: structure of the menaquinone biosynthesis protein mend from2 bacillus subtilis Resolution 2.35 Å

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		8	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.
Predicted Secondary structure										.																																																														.	.
Query SS confidence										.																																																														.	.
Query Sequence		G	A	V	A	S	V	A	F	.	R	T	S	E	V	I	A	I	Y	P	I	T	P	S	S	T	M	A	E	Q	A	D	A	W	A	G	N	G	L	K	N	V	W	G	D	T	P	R	V	V	E	M	Q	S	E	A	G	A	I	A	T	V	H	G	A	L	Q	T	G	A	L	.	.	S	T	S	F	T	S	S	Q
Query Conservation										.																																																														.	.
Alig confidence										.																									.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.
Template Sequence		G	S	F	I	D	E	F	A	L	S	G	I	T	D	A	V	V	C	P	G	S	R	S	T	P	L	A	V	L	C	A	A	H	.	.	.	.	.	.	.	.	.	.	P	D	I	S	V	H	V	Q	I	D	E	R	S	A	G	F	F	A	L	G	L	A	K	A	K	Q	R	P	V	L	L	I	C	T	S	G	T
Template Known Secondary structure												T										S	T	T											.	.	.	.	.	.	.	.	.	.	T	T							S	S																T	S								S	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.											.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.							.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																.																					.	.	.	.	.	.
Query SS confidence																																.																					.	.	.	.	.	.
Query Sequence		G	L	L	L	M	I	P	T	L	Y	K	L	A	G	E	L	T	P	F	V	L	H	V	A	A	R	T	V	A	T	.	H	A	L	S	I	F	G	D	H	S	D	V	M	A	V	R	Q	T	G	C	.	.	.	.	.	.	A	M	L	C	A	A	N	V	Q	E	A	Q	D	F	A	L	I	S	Q	I	A	T	L
Query Conservation																																.																					.	.	.	.	.	.
Alig confidence																																.																					.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	A	N	F	Y	P	A	V	V	E	A	H	Y	S	R	V	P	I	I	V	L	T	A	D	R	P	H	E	L	R	E	V	G	A	P	Q	A	I	N	Q	H	F	L	F	G	N	F	V	K	F	F	T	D	S	A	L	P	E	E	S	P	Q	M	L	R	Y	I	R	T	L	A	S	R	A	A	G	E	A	Q
Template Known Secondary structure					T	T											T												G	G	G	S	S	S			T	T					T	T	T	T	G	G	G	S	S											S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		158	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		K	S	R	V	.	P	F	I	H	F	F	D	G	F	R	T	S	H	E	I	N	K	I	V	P	L	A	D	D	T	I	L	D	L	M	P	Q	V	E	I	D	A	H	R	A	R	A	L	N	P	E	H	P	V	I	R	G	T	S	A	N	P	D	T	Y	F	Q	S	R	E	A	T	N	P	W	Y	N	A	V	Y
Query Conservation						.
Alig confidence						.								.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	R	P	M	G	P	V	H	V	N	V	P	.	L	R	E	P	L	M	P	D	L	S	D	E	P	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	M	R	T	G	R	H	V	S	V	K	T	G	T	Q	S	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R
Template Known Secondary structure		S	S	S										.			S						T	T	S		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S	S		S	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure														.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.																		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.																	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.							.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.													.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.													.	.	.	.	.
Query Sequence		D	H	V	E	Q	A	M	N	D	F	S	A	A	T	G	R	Q	Y	Q	P	F	E	Y	Y	G	H	P	Q	A	E	R	V	I	I	L	M	G	S	A	I	G	T	C	E	E	V	V	D	E	L	L	T	R	G	E	K	V	.	.	.	.	.	.	G	V	L	K	V	R	L	Y	R	P	F	S	.	.	.	.	.
Query Conservation																																																											.	.	.	.	.	.													.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.													.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	S	L	S	D	V	A	E	M	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	E	K	G	M	I	V	C	G	E	L	H	S	D	A	D	K	E	N	I	I	A	L	S	K	A	L	Q	Y	P	I	L	A	D	P	L	S	N	L	R	N	G	V	H	D	K	S	T	V	I	D	A	Y	D
Template Known Secondary structure		G	G	G									.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S																									T							G	G	G	T	T	T	B	S	S	S			T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.															.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
					306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.			.	.	.	.	.	.	.	380
Predicted Secondary structure		.	.	.																																																																				.	.
Query SS confidence		.	.	.																																																																				.	.
Query Sequence		.	.	.	A	K	H	L	L	Q	A	L	P	G	S	V	R	S	V	A	V	L	D	R	T	K	E	P	G	A	Q	A	E	P	L	Y	L	D	V	M	T	A	L	A	E	A	F	N	N	G	E	R	E	T	L	P	R	V	I	G	G	R	Y	G	L	S	S	K	E	F	G	.	.	P	D	C	V	L	A	V	F
Query Conservation		.	.	.																																																																				.	.
Alig confidence		.	.	.												.													.	.	.	.	.	.																																						.	.
Template Conservation																.													.	.	.	.	.	.
Template Sequence		S	F	L	K	D	D	E	L	K	R	K	L	R	P	.	D	V	V	I	R	F	G	P	M	P	V	S	.	.	.	.	.	.	K	P	V	F	L	W	L	K	D	D	P	T	I	Q	Q	I	V	I	D	E	D	G	G	W	R	D	P	T	Q	A	S	A	H	M	I	H	C	N	A	S	V	F	A	E	E	I	M
Template Known Secondary structure				T	T	S										.	S						S	S			S		.	.	.	.	.	.											T	T	S							T	T						T	T	S			S					S
Template Predicted Secondary structure																.													.	.	.	.	.	.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.							.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	L	N	A	A	K	P	K	A	R	F	T	V	G	I	Y	D	D	V	T	N	L	S	L	P	L	P	E	N	T	L	P	N	S	A	K	L	E	A	L	F	Y	G	L	G	S	D	G	S	V	S	A	T	K	N	N	I	K	I	I	G	N	S	T	P	W	Y	A	Q	G	Y	F	V	Y	D	S	K	K	A
Query Conservation
Alig confidence																																																							.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.
Template Sequence		A	G	L	T	A	A	T	R	S	S	E	W	L	E	K	W	Q	F	V	N	G	R	F	R	E	H	L	Q	T	I	S	S	E	D	V	S	F	E	G	N	L	Y	R	I	L	Q	H	L	V	P	E	N	S	.	.	.	.	.	.	S	L	F	V	G	N	S	M	P	I	R	D	V	D	T	F	F	E	K	Q	D
Template Known Secondary structure			T	S		S	S																							T	S					T	T	S												S		T	T		.	.	.	.	.	.						T	T													B	S
Template Predicted Secondary structure																																																							.	.	.	.	.	.
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.							.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	L	T	V	S	H	L	R	V	S	E	Q	P	I	R	S	A	Y	L	I	S	Q	A	D	F	V	G	C	H	Q	L	Q	F	I	D	K	Y	Q	M	A	E	R	L	K	P	G	G	I	F	L	L	N	T	P	Y	S	A	D	E	V	W	S	R	L	P	Q	E	V	Q	A	V	L	N	Q	K	K	A	R	F
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.														.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.														.
Template Sequence		R	P	F	R	I	Y	S	N	R	G	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	D	G	V	V	S	S	A	M	G	V	C	E	G	T	K	A	P	.	.	.	V	T	L	V	I	G	D	L	S	F	Y	H	D	.	L	N	G	L	L	A	A	K	K	L	G	I	P	L	T	V
Template Known Secondary structure										T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S													T	S		.	.	.													T	.	G	G	G	G
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.														.
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.																	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450				.	.	.	.	.	.	.	.	.	460	.	.	.		.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
		541	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	V	I	N	A	A	K	I	A	R	E	C	G	L	A	A	R	I	N	T	V	M	Q	M	A	F	F	H	L	T	Q	I	L	P	G	D	S	A	L	A	E	L	Q	G	A	I	A	K	S	Y	S	S	K	G	Q	D	L	V	E	R	N	W	Q	A	L	A	L	A	R	E	S	V	E	E	V	P	L	Q	P	V
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	V	N	N	D	G	G	G	I	F	S	F	L	P	Q	A	S	E	K	T	H	F	E	D	L	F	G	T	P	T	G	L	D	F	K	H	.	.	.	.	.	.	.	.	A	A	A	L	Y	G	G	T	Y	S	C	P	A	S	W	.	.	.	.	.	.	.	.	.	.	.	.	D	E	F	K	T	A	Y	A
Template Known Secondary structure							S	S		G	G	G	G	G	S	G	G	G	S									T	T							T			.	.	.	.	.	.	.	.					T	T							S	S		.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.									.	.	.	520	.	.	.	.	.	.	.	.	.	530	.													.	.	.	.	.	.	.	.
		621	.	.	.	.	.	.	.	.	630	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	H	S	A	N	R	P	P	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	Q	A	D	K	P	G	L	H	L	I
Template Known Secondary structure					S	S
Template Predicted Secondary structure
Template SS confidence
		540	.	.	.	.	.	.	.	.	.	550