Job Description P52647 Confidence 99.66% Date Thu Jan 5 12:05:59 GMT 2012 Rank 27 Aligned Residues 495 % Identity 11% Template c2v3wC_ PDB info PDB header:lyase Chain: C: PDB Molecule:benzoylformate decarboxylase; PDBTitle: crystal structure of the benzoylformate decarboxylase2 variant l461a from pseudomonas putida Resolution 2.20 Å

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		8	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.
Predicted Secondary structure										.																																																														.	.
Query SS confidence										.																																																														.	.
Query Sequence		G	A	V	A	S	V	A	F	.	R	T	S	E	V	I	A	I	Y	P	I	T	P	S	S	T	M	A	E	Q	A	D	A	W	A	G	N	G	L	K	N	V	W	G	D	T	P	R	V	V	E	M	Q	S	E	A	G	A	I	A	T	V	H	G	A	L	Q	T	G	A	L	.	.	S	T	S	F	T	S	S	Q
Query Conservation										.																																																														.	.
Alig confidence										.																							.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	T	T	Y	E	L	L	R	R	Q	G	I	D	T	V	F	G	N	P	G	S	N	E	L	P	F	L	K	D	F	P	.	.	.	.	.	.	.	.	.	.	.	.	E	D	F	R	Y	I	L	A	L	Q	E	A	C	V	V	G	I	A	D	G	Y	A	Q	A	S	R	K	P	A	F	I	N	L	H	S	A	A
Template Known Secondary structure											T	T										G	G	G					T	T			.	.	.	.	.	.	.	.	.	.	.	.	T	T							S	S																T	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.													.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.
Predicted Secondary structure																																		.																																														.
Query SS confidence																																		.																																														.
Query Sequence		G	L	L	L	M	I	P	T	L	Y	K	L	A	G	E	L	T	P	F	V	L	H	V	A	A	R	T	V	A	T	H	A	.	L	S	I	F	G	D	H	S	D	V	M	A	V	R	Q	T	G	C	A	M	L	C	A	A	N	V	Q	E	A	Q	D	F	A	L	I	S	Q	I	A	T	L	K	S	R	V	.	P
Query Conservation																																		.																																														.
Alig confidence																																		.																																														.
Template Conservation
Template Sequence		G	T	G	N	A	M	G	A	L	S	N	A	W	N	S	H	S	P	L	I	V	T	A	G	Q	Q	T	R	A	M	I	G	V	E	A	L	L	T	N	V	D	A	A	N	L	P	R	P	L	V	K	W	S	Y	E	P	A	S	A	A	E	V	P	H	A	M	S	R	A	I	H	M	A	S	M	A	P	Q	G	P
Template Known Secondary structure						T										T	T																T	T	T		T	T			T	T	G	G	G	T	T	T	T	S		S						S	S	S	T	T														S	S	S
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	H	F	F	D	G	F	R	T	S	H	E	I	N	K	I	V	P	L	A	D	D	T	I	L	D	L	M	P	Q	V	E	I	D	A	H	R	A	R	A	L	N	P	E	H	P	V	I	R	G	T	S	A	N	P	D	T	Y	F	Q	S	R	E	A	T	N	P	W	Y	N	A	V	Y	D	H	V	E	Q	A
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	Y	L	S	V	P	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	D	W	D	K	D	A	D	P	Q	S	H	H	L	F	D	R	H	V	S	S	S	V	R	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Q	D	L	D	I	L
Template Known Secondary structure								G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	T	T	S	B			G	G	G	G	G	G	T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160																.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.																										.	.	.	190	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.															.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	N	D	F	S	A	A	T	G	R	Q	Y	Q	P	F	E	Y	Y	G	H	P	Q	A	E	R	V	I	I	L	M	G	S	A	I	G	T	C	E	E	V	V	D	E	L	L	T	R	.	G	E	K	V	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	V	R	L	Y	R	P	F	S	A	K
Query Conservation																																																	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.							.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																									.
Template Sequence		V	K	A	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	S	N	P	A	I	V	L	G	P	D	V	D	A	A	N	A	N	A	D	C	V	M	L	A	E	R	L	K	A	P	V	W	V	A	P	S	A	P	R	C	P	F	P	T	R	H	P	C	F	R	G	L	M	P	.	A	G	I	A
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S												T	T												T	T							S	S		S	B			S		T	T	S	T	T							.	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																									.
Template SS confidence
		194	.	.	.	.															.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.					.	.	.	.	.	.	.	.	380		.	.
Predicted Secondary structure																																																																		.	.	.	.										.
Query SS confidence																																																																		.	.	.	.										.
Query Sequence		H	L	L	Q	A	L	P	G	S	V	R	S	V	A	V	L	D	R	T	K	E	P	G	A	Q	A	E	P	L	Y	L	D	V	M	T	A	L	A	E	A	F	N	N	G	E	R	E	T	L	P	R	V	I	G	G	R	Y	G	L	S	S	K	E	F	.	.	.	.	G	P	D	C	V	L	A	V	F	.	A	E
Query Conservation																																																																		.	.	.	.										.
Alig confidence											.																		.	.	.	.	.	.	.	.	.																													.	.	.	.										.
Template Conservation											.																		.	.	.	.	.	.	.	.	.
Template Sequence		A	I	S	Q	L	L	E	G	H	.	D	V	V	L	V	I	G	A	P	V	F	R	Y	H	Q	Y	D	.	.	.	.	.	.	.	.	.	P	G	Q	Y	L	K	P	G	T	R	L	I	S	V	T	C	D	P	L	E	A	A	R	A	P	M	G	D	A	I	V	A	D	I	G	A	M	A	S	A	L	A	N	L
Template Known Secondary structure								T	T		.	S						S	S		T	T				S			.	.	.	.	.	.	.	.	.		S		S	S		S	S								S									S	S	S					S
Template Predicted Secondary structure											.																		.	.	.	.	.	.	.	.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.										.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	A	A	K	P	K	A	R	F	T	V	G	I	Y	D	D	V	T	N	L	S	L	P	L	P	E	N	T	L	P	N	S	A	K	L	E	A	L	F	Y	G	L	G	S	D	G	S	V	S	A	T	K	N	N	I	K	I	I	G	N	S	T	P	W	Y	A	Q	G	Y	F	V	Y	D	S	K	K	A	G	G
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	E	E	S	S	R	Q	L	P	T	A	A	P	E	P	A	K	V	D	Q	D	A	G	R	L	H	P	E	T	V	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	N	D	M	A	P	E	N	A	I	Y	L	N	E	S	T	S	T	T	A	Q	M	W	Q	R	L	N	M	R	N	P	G
Template Known Secondary structure		S				S	S																S	S	S	B								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S		T	T								T	T	S												S	S	S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360																.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	V	S	H	L	R	V	S	E	Q	P	I	R	S	A	Y	L	I	S	Q	A	D	F	V	G	C	H	Q	L	Q	F	I	D	K	Y	Q	M	A	E	R	L	K	P	G	G	I	F	L	L	N	T	P	Y	S	A	D	E	V	W	S	R	L	P	Q	E	V	Q	A	V	L	N	Q	K	K	A	R	F	Y	V
Query Conservation
Alig confidence							.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.																					.
Template Conservation							.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.																					.
Template Sequence		S	Y	Y	F	C	.	A	A	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	F	A	L	P	A	A	I	G	V	.	.	Q	L	A	E	P	E	R	Q	V	I	A	V	I	G	D	G	S	A	N	Y	.	S	I	S	A	L	W	T	A	A	Q	Y	N	I	P	T	I	F	V	I
Template Known Secondary structure							.	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S									.	.					T	T	S								T	T	G	G	G	T	.	T	G	G	G								T
Template Predicted Secondary structure							.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.																					.
Template SS confidence
		394	.	.	.	.		.	400	.	.																		.	.	.	.	.	.	.	410	.	.	.			.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.		.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
		543	.	.	.	.	.	.	550	.		.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		I	N	A	A	K	I	A	R	E	.	C	G	L	A	A	R	I	N	T	V	M	Q	M	A	F	F	H	L	T	Q	I	L	P	G	D	S	A	L	A	E	L	Q	G	A	I	A	K	S	Y	S	S	K	G	Q	D	L	V	E	R	N	W	Q	A	L	A	L	A	R	E	S	V	E	E	V	P	L	Q	P	V	N
Query Conservation											.
Alig confidence											.																						.	.	.	.	.	.	.	.	.	.	.															.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.															.	.
Template Sequence		M	N	N	G	T	Y	G	A	A	R	W	F	A	G	V	L	E	A	E	N	V	P	G	L	D	V	P	G	I	D	F	.	.	.	.	.	.	.	.	.	.	.	R	A	L	A	K	G	Y	G	V	Q	A	L	K	A	.	.	D	N	L	E	Q	L	K	G	S	L	Q	E	A	L	S	A	K	G	P	V	L	I
Template Known Secondary structure					S	B											T	T			S			S		B							.	.	.	.	.	.	.	.	.	.	.							T	T							.	.	S	S															S	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.															.	.
Template SS confidence
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.												.	.	.	.	.	.	490	.	.	.	.	.	.	.			.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.
		622	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	H	S	A	N	R	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	V	S	T	V	S	P
Template Known Secondary structure					B
Template Predicted Secondary structure
Template SS confidence
		520	.	.	.	.	.	.