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Job DescriptionP52647
Confidence99.73%DateThu Jan 5 12:05:59 GMT 2012
Rank21Aligned Residues511
% Identity11%Templatec2q27B_
PDB info PDB header:lyaseChain: B: PDB Molecule:oxalyl-coa decarboxylase; PDBTitle: crystal structure of oxalyl-coa decarboxylase from escherichia coli
Resolution2.12 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  MITIDGNGAVASVAF. RTSEVIAIYPITPSSTMAEQADAWAGNGLKNVWGDTPRVVEMQSEAGAIATVHGALQTGAL. . S
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Template Sequence  LQMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQA. . . . . . . . . . . EGIRYIGFRHEQSAGYAAAASGFLTQKPGI
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   5....10.........20.........30.........40... ......50.........60.........70...
 
   78.80.........90.........100.........110. ........120.........130.........140.........150....
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Query Sequence  TSFTSSQGLLLMIPTLYKLAGELTPFVLHVAART. . . VATHALSIFGDHSDVMAVRQTGCAMLCAANVQEAQDFALISQI
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Template Sequence  CLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFRVN. QPQDLGIALARAIR
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TTS

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GGGSS

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   74.....80.........90.........100.........110.........120.........130........ .140.........150..
 
   155....160. ........170.........180.........190.........200.........210.........220.........230...
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Query Sequence  ATLKSRV. PFIHFFDGFRTSHEINKIVPLADDTILDLMPQVEIDAHRARALNPEHPVIRGTSANPDTYFQSREATNPWYN
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Template Sequence  VSVSGRPGGVYLDLPANVLAATME. . . . . . . . . KDEALTTIVKVENPSPALLPC. . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  SSS


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   153......160.........170...... ...180.........190.......
 
   234.....240.........250.........260.........270.........280.........290....... ..300......
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Query Sequence  AVYDHVEQAMNDFSAATGRQYQPFEYYGHPQAERVIILMGSAIGTCEEVVDELLTRGEKVGVLK. . . . . . . VRLYRPFSA
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Template Sequence  . . PKSVTSAISLLA. . . . . . . . . . . . . . KAERPLIILGKGAAYSQADEQLREFIES. AQIPFLPMSMAKGILEDTHPLSA
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   198.200......... 210.........220.........230....... ..240.........250.........260
 
   307..310.........320.........330.........340.........350.........360......... 370.........380.....
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Query Sequence  KHLLQALPGSVRSVAVLDRTKEPGAQAEPLYLDVMTALAEAFNNGERETLPRVIGGRYGLSSK. EFGPDCVLAVFAELNA
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Template Sequence  AAARSFALANADVVMLVGARLNWLLAHGKKG. . . . . . WAADTQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQGMLAELK
Template Known Secondary structure  GGG
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SGGGGGGTTT......S
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   261........270.........280.........290. ........300.........310.........320.........330....
 
   386...390......... 400.........410.........420.........430.........440.........450.........460
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Query Sequence  AKPKARFTVGIYDD. . . . . VTNLSLPLPENTLPNSAKLEALFYGLGSDGSVSATKNNIKIIGNSTPWYAQGYFVYDSKKA
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Template Sequence  QNTFTTPLVWRDILNIHKQQNAQKMHEKLSTDTQPLNYFNALSAV. . . . RDVLRENQDIYLVNEGANTLDNARNIIDMYK
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   335....340.........350.........360.........370......... 380.........390.........400.........410
 
   461........470.........480.........490.........500.........510.........520.........530.........540
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Query Sequence  GGLTVSHLRVSEQPIRSAYLISQADFVGCHQLQFIDKYQMAERLKPGGIFLLNTPYSADEVWSRLPQEVQAVLNQKKARF
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Template Sequence  PRRRLDCGTWGV. . . . . . . . . . . . . . . . . MGIGMGYAIGASVTSGSP. . . VVAIEGDSAFGFSG. MEIETICRYNLPVTI
Template Known Secondary structure  SS
STTTT
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   411........420.. .......430.........440 .........450.... .....460.........
 
   541........550.........560.........570.........580.........590.........600.........610........
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Query Sequence  YVINAAKIARECGLAARINTVMQMAFFHLTQILPGDSALAELQGAIAKSYSSKGQDLVERNWQALALARESVEEVPLQ
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Template Sequence  VIFNNGGIYRG. DGVDLSGAGAPS. . . . . . . . . PTDLLHHARYDKLMDAFRGVGYNVT. . TTDELRHALTTGIQSRKP
Template Known Secondary structure 
SBSS
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   470.........480 .........490.. .......500.........510....... ..520.........530.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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