Job Description P52647 Confidence 99.24% Date Thu Jan 5 12:05:59 GMT 2012 Rank 52 Aligned Residues 289 % Identity 16% Template c2o1xA_ PDB info PDB header:transferase Chain: A: PDB Molecule:1-deoxy-d-xylulose-5-phosphate synthase; PDBTitle: 1-deoxy-d-xylulose 5-phosphate synthase (dxs) from2 deinococcus radiodurans Resolution 2.90 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	A	V	A	S	V	A	F	R	T	S	E	V	I	A	I	Y	P	I	T	P	S	S	T	M	A	E	Q	A	D	A	W	A	G	N	G	L	K	N	V	W	G	D	T	P	R	V	V	E	M	Q	S	E	A	G	A	I	A	T	V	H	G	A	L	Q	T	G	A	L	S	T	S	F	T	S	S	Q	G	L
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.
Template Sequence		G	E	A	V	T	E	W	A	K	T	D	P	R	T	F	V	V	T	P	A	M	R	E	G	S	G	L	V	E	F	S	R	V	H	P	H	R	.	.	.	.	.	.	.	.	.	Y	L	D	V	G	I	A	E	E	V	A	V	T	T	A	A	G	M	A	L	Q	G	M	R	P	V	V	A	I	Y	S	T	F	L
Template Known Secondary structure													T	T						S	S		T	T	T	T	T									G	G	G	.	.	.	.	.	.	.	.	.						S															T	T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.										.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		87	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure									.																																								.
Query SS confidence									.																																								.
Query Sequence		L	L	M	I	P	T	L	.	Y	K	L	A	G	E	L	T	P	F	V	L	H	V	A	A	R	T	V	A	T	H	A	L	S	I	F	G	D	H	S	D	V	M	A	V	R	Q	T	.	G	C	A	M	L	C	A	A	N	V	Q	E	A	Q	D	F	A	L	I	S	Q	I	A	T	L	K	S	R	V	P	F	I
Query Conservation									.																																								.
Alig confidence									.																																								.																						.	.	.	.
Template Conservation																																																																							.	.	.	.
Template Sequence		Q	R	A	Y	D	Q	V	L	H	D	V	A	I	E	H	L	N	V	T	F	C	I	D	R	A	G	I	V	G	A	D	G	A	T	H	N	G	V	F	D	L	S	F	L	R	S	I	P	G	V	R	I	G	L	P	K	D	A	A	E	L	R	G	M	L	K	Y	A	Q	.	.	.	.	T	H	D	G	P	F	A
Template Known Secondary structure		G	G	G							T	T	T	T	T	T									S	B	B				T	T		T	T	T		B		S					T	T	T	S	T	T							S	S													.	.	.	.		S	S	S
Template Predicted Secondary structure																																																																							.	.	.	.
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.					.	470	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	F	F	D	G	F	R	T	S	H	E	I	N	K	I	V	P	L	A	D	D	T	I	L	D	L	M	P	Q	V	E	I	D	A	H	R	A	R	A	L	N	P	E	H	P	V	I	R	G	T	S	A	N	P	D	T	Y	F	Q	S	R	E	A	T	N	P	W	Y	N	A	V	Y	D	H	V	E	Q	A	M	N
Query Conservation
Alig confidence					.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	R	Y	.	.	.	.	.	.	.	P	R	G	N	T	A	Q	V	P	A	G	T	W	P	D	L	K	W	G	E	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					.	.	.	.	.	.	.		S	S	B						T	T							T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		476	.	.								.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	S	A	A	T	G	R	Q	Y	Q	P	F	E	Y	Y	G	H	P	Q	A	E	R	V	I	I	L	M	G	S	A	I	G	T	C	E	E	V	V	D	E	L	L	T	R	G	E	K	V	G	V	L	K	V	R	L	Y	R	P	F	S	A	K	H	L	L	Q	A	L	P	G	S	V	R	S	V	A	V	L	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.																										.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.																										.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	L	K	G	G	D	D	V	V	I	L	A	G	G	K	A	L	D	Y	A	L	K	A	A	E	D	L	P	.	.	.	.	G	V	G	V	V	N	A	R	F	V	K	P	L	D	E	E	M	L	R	E	V	G	G	R	A	.	R	A	L	I	T	V	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.							S	S																		T	T		T	.	.	.	.	T											S														.	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.																										.
Template SS confidence
																500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.					.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.		.	.	.	.	.	.	560
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370									.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.
Query Sequence		R	T	K	E	P	G	A	Q	A	E	P	L	Y	L	D	V	M	T	A	L	A	E	A	F	N	N	G	E	R	E	T	L	P	R	V	I	G	G	R	Y	G	L	S	S	K	E	.	.	.	.	.	.	.	.	F	G	P	D	C	V	L	A	V	F	A	E	L	N	A	A	K	P	K
Query Conservation																																																.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.
Template Sequence		D	N	T	V	V	G	G	F	G	G	A	V	L	E	A	L	N	S	M	N	L	.	.	.	.	.	.	H	P	T	V	R	V	L	G	I	P	D	E	F	Q	E	H	A	T	A	E	S	V	H	A	R	A	G	I	D	A	P	A	I	R	T	V	L	A	E	L	G	V	D	V	P	I
Template Known Secondary structure					S	S	S	S												T	T		.	.	.	.	.	.											S	S				S											T		S											T	T
Template Predicted Secondary structure																							.	.	.	.	.	.
Template SS confidence
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.							.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions