Job Description P52647 Confidence 99.41% Date Thu Jan 5 12:05:59 GMT 2012 Rank 45 Aligned Residues 513 % Identity 12% Template c2jlaD_ PDB info PDB header:transferase Chain: D: PDB Molecule:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene PDBTitle: crystal structure of e.coli mend, 2-succinyl-5-enolpyruvyl-2 6-hydroxy-3-cyclohexadiene-1-carboxylate synthase - semet3 protein Resolution 2.81 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.
Predicted Secondary structure										.																																																														.	.
Query SS confidence										.																																																														.	.
Query Sequence		G	A	V	A	S	V	A	F	.	R	T	S	E	V	I	A	I	Y	P	I	T	P	S	S	T	M	A	E	Q	A	D	A	W	A	G	N	G	L	K	N	V	W	G	D	T	P	R	V	V	E	M	Q	S	E	A	G	A	I	A	T	V	H	G	A	L	Q	T	G	A	L	.	.	S	T	S	F	T	S	S	Q
Query Conservation										.																																																														.	.
Alig confidence										.																									.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	I	L	E	A	L	T	R	H	G	V	R	H	I	C	I	A	P	G	S	R	S	T	P	L	T	L	A	A	A	E	N	.	.	.	.	.	.	.	.	.	.	S	A	F	I	H	H	T	H	F	D	E	R	G	L	G	H	L	A	L	G	L	A	K	V	S	K	Q	P	V	A	V	I	V	T	S	G	T
Template Known Secondary structure										T	T	T										S	T	T											.	.	.	.	.	.	.	.	.	.	T	T							S																		S								S	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.											.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																															.																						.	.
Query SS confidence																															.																						.	.
Query Sequence		G	L	L	L	M	I	P	T	L	Y	K	L	A	G	E	L	T	P	F	V	L	H	V	A	A	R	T	V	A	.	T	H	A	L	S	I	F	G	D	H	S	D	V	M	A	V	R	Q	T	G	C	.	.	A	M	L	C	A	A	N	V	Q	E	A	Q	D	F	A	L	I	S	Q	I	A	T	L	K	S	R	V
Query Conservation																															.																						.	.
Alig confidence																															.																						.	.
Template Conservation
Template Sequence		A	V	A	N	L	Y	P	A	L	I	E	A	G	L	T	G	E	K	L	I	L	L	T	A	D	R	P	P	E	L	I	D	C	G	A	N	Q	A	I	R	Q	P	G	X	F	A	S	H	P	T	H	S	I	S	L	P	R	P	T	Q	D	I	P	A	R	W	L	V	S	T	I	D	H	A	L	G	T	L	H	A
Template Known Secondary structure					T	T																							G	G	G	S	S	S	S		T	T					T	T	T	T	T	T		S	S										T	T	S															T			S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
			162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.														.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure		.																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	P	F	I	H	F	F	D	G	F	R	T	S	H	E	I	N	K	I	V	P	L	A	D	D	T	I	L	D	L	M	P	Q	V	E	I	D	A	H	R	A	R	A	L	N	P	.	.	.	.	.	.	.	.	.	.	.	.	.	E	H	P	V	I	R	G	T	S	A	N	P	D	T	Y	F	Q	S	R	E	A
Query Conservation		.																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.				.																																										.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template Conservation						.																																																																				.	.	.	.	.	.	.	.
Template Sequence		G	G	V	H	.	I	N	C	P	F	A	E	P	L	Y	G	E	X	D	D	T	G	L	S	W	Q	Q	R	L	G	D	W	W	Q	D	D	K	P	W	L	R	E	A	P	R	L	E	S	E	K	Q	R	D	W	F	F	W	R	Q	K	R	G	V	V	V	A	G	R	X	S	A	E	.	.	.	.	.	.	.	.
Template Known Secondary structure		S				.							S				S					T	T						T	T	G	G	G	G	G		S	S		S	S												T	T					T	T	S								S					.	.	.	.	.	.	.	.
Template Predicted Secondary structure						.																																																																				.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	P	W	Y	N	A	V	Y	D	H	V	E	Q	A	M	N	D	F	S	A	A	T	G	R	Q	Y	Q	P	F	E	Y	Y	G	H	P	Q	A	E	R	V	I	I	L	M	G	S	A	I	G	T	C	E	E	V	V	D	E	L	L	T	R	G	E	K	V	G	V	L	K	V	R	L	Y	R	P	F	S	A	K
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.																																														.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.																																														.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	E	G	K	K	V	A	L	W	A	Q	T	L	G	.	.	.	.	.	W	P	L	I	G	D	V	L	S	Q	T	G	Q	P	L	P	C	A	D	L	W	L	G	N	A	K	A	T	S	E	L	Q	Q	A	Q	I	V	V	Q	L	G	S	S	L	T	.	G	K	R	L	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.													T	.	.	.	.	.							T	T	T		S			S	S							T	T	S								T	T		S						S					.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.																																														.
Template SS confidence
													233	.	.	.	.	.	.	240	.	.	.	.	.						.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.				.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.							.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.																																													.	.	.	.	.	.
Query SS confidence																	.	.	.																																													.	.	.	.	.	.
Query Sequence		H	L	L	Q	A	L	P	G	S	V	R	S	V	A	V	.	.	.	L	D	R	T	K	E	P	G	A	Q	A	E	P	L	Y	L	D	V	M	T	A	L	A	E	A	F	N	N	G	E	R	E	T	L	P	R	V	I	G	G	R	Y	G	L	.	.	.	.	.	.	S	S	K	E	F	G	P	D	C	V	L	A
Query Conservation																	.	.	.																																													.	.	.	.	.	.
Alig confidence											.						.	.	.																																													.	.	.	.	.	.
Template Conservation											.
Template Sequence		Q	W	Q	A	S	C	E	P	E	.	E	Y	W	I	V	D	D	I	E	G	R	L	D	P	A	H	H	R	G	R	R	L	I	A	N	I	A	D	W	L	E	L	H	P	A	E	K	R	Q	P	W	C	V	E	I	P	R	L	A	E	Q	A	X	Q	A	V	I	A	R	R	D	A	F	G	E	A	Q	L	A	H
Template Known Secondary structure										S	.							S	S		S				T	T			S						S									S										S	S															T			S		S
Template Predicted Secondary structure											.
Template SS confidence
		296	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	A	E	L	N	A	A	K	P	K	A	R	F	T	V	G	I	Y	D	D	V	T	N	L	S	L	P	L	P	E	N	T	L	P	N	S	A	K	L	E	A	L	F	Y	G	L	G	S	D	G	S	V	S	A	T	K	N	N	I	K	I	I	G	N	S	T	P	W	Y	A	Q	G	Y	F	V	Y	D	S	K
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	I	C	D	Y	L	P	E	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	F	V	G	N	S	L	V	V	R	L	I	D	A	L	S	Q	L
Template Known Secondary structure		T	G	G	G	G			T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		375	.	.	.	.	380	.	.	.	.																																																				.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	G	G	L	T	V	S	H	L	R	V	S	E	Q	P	I	R	S	A	Y	L	I	S	Q	A	D	F	V	G	C	H	Q	L	Q	F	I	D	K	Y	Q	M	A	E	R	L	K	P	G	G	I	F	L	L	N	T	P	Y	S	A	D	E	V	W	S	R	L	P	Q	E	V	Q	A	V	L	N	Q	K	K	A
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.														.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.														.
Template Sequence		P	A	G	Y	P	V	Y	S	N	R	G	A	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	G	L	L	S	T	A	A	G	V	Q	R	A	S	G	K	P	.	.	.	T	L	A	I	V	G	D	L	S	A	L	Y	D	.	L	N	A	L	A	L	L	R	Q	V	S	A	P	L
Template Known Secondary structure			T	T								S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S																.	.	.													T	.	G	G	G	G	G	G	G	G			S	S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.														.
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.																		.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.				.	.	.	.	440	.	.	.	.	.	.	.	.		.	450	.	.	.	.	.	.	.	.	.	460	.	.
		539	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	Y	V	I	N	A	A	K	I	A	R	E	C	G	L	A	A	R	I	N	T	V	M	Q	M	A	F	F	H	L	T	Q	I	L	P	G	D	S	A	L	A	E	L	Q	G	A	I	A	K	S	Y	S	S	K	G	Q	D	L	V	E	R	N	W	Q	A	L	A	L	A	R	E	S	V	E	E	V	P	L	Q
Query Conservation
Alig confidence																			.	.																					.	.	.	.	.	.	.	.																.	.													.	.	.	.
Template Conservation																			.	.																					.	.	.	.	.	.	.	.																.	.													.	.	.	.
Template Sequence		V	L	I	V	V	N	N	N	G	G	Q	I	F	S	L	L	P	.	.	T	P	Q	S	E	R	E	R	F	Y	L	X	P	Q	N	V	H	F	E	H	.	.	.	.	.	.	.	.	A	A	A	X	F	E	L	K	Y	H	R	P	Q	N	W	.	.	Q	E	L	E	T	A	F	A	D	A	W	R	.	.	.	.
Template Known Secondary structure									S	S		T					T	T	.	.			G	G	G					T	T							S			.	.	.	.	.	.	.	.					T	T							S	S		.	.											T	T	.	.	.	.
Template Predicted Secondary structure																			.	.																					.	.	.	.	.	.	.	.																.	.													.	.	.	.
Template SS confidence
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.			480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.									500	.	.	.	.	.	.	.	.	.	510	.	.	.	.			.	.	.	.	.	520	.	.	.	.	.	.
		619	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	N	P	H	S	A	N	R	P	P	V	V	S	D	A	A	P	D	F	V	K	T	V	T	A	A	M
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	T	P	T	T	T	V	I	E	X	V	V	N	D	T	D	G	A	Q	T	L	Q	Q	L	L	A	Q	V
Template Known Secondary structure		.	S	S	S										T	T
Template Predicted Secondary structure		.
Template SS confidence
			527	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.