Job Description P52647 Confidence 99.62% Date Thu Jan 5 12:05:59 GMT 2012 Rank 32 Aligned Residues 311 % Identity 15% Template c2bp7F_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:2-oxoisovalerate dehydrogenase beta subunit; PDBTitle: new crystal form of the pseudomonas putida branched-chain2 dehydrogenase (e1) Resolution 2.9 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.
Predicted Secondary structure																					.																																																							.
Query SS confidence																					.																																																							.
Query Sequence		N	G	A	V	A	S	V	A	F	R	T	S	E	V	I	A	I	Y	P	.	I	T	P	S	S	T	M	A	E	Q	A	D	A	W	A	G	N	G	L	K	N	V	W	G	D	T	P	R	V	V	E	M	Q	S	E	A	G	A	I	A	T	V	H	G	A	L	Q	T	G	A	L	S	T	S	.	F	T	S	S	Q
Query Conservation																					.																																																							.
Alig confidence																					.																													.	.	.	.	.																						.
Template Conservation																																																		.	.	.	.	.
Template Sequence		R	S	A	M	D	V	M	L	E	R	D	D	N	V	V	V	Y	G	Q	D	V	G	Y	F	G	G	V	F	R	C	T	E	G	L	Q	T	K	Y	G	K	S	R	V	F	D	A	P	I	.	.	.	.	.	S	E	S	G	I	V	G	T	A	V	G	M	G	A	Y	G	L	R	P	V	V	E	I	Q	F	A	D
Template Known Secondary structure													T	T						T	T		S	S	S			T	T	S	T	T	T	T							T	T	T						S	.	.	.	.	.																T								S		G	G
Template Predicted Secondary structure																																																		.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60						.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.										.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.
Query Sequence		G	L	L	L	M	I	P	T	L	Y	K	L	A	G	.	.	.	.	.	.	.	.	.	E	L	T	P	F	V	L	H	V	A	A	R	T	V	A	T	H	A	L	S	I	F	G	D	H	S	D	V	M	A	V	R	Q	T	G	C	A	M	L	C	A	A	N	V	Q	E	A	Q	D	F	A	L	I	S	Q	I	A
Query Conservation																.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.												.
Template Conservation																																				.
Template Sequence		Y	F	Y	P	A	S	D	Q	I	V	S	E	M	A	R	L	R	Y	R	S	A	G	E	F	I	A	P	L	T	L	R	M	P	C	.	G	G	G	I	Y	G	G	Q	T	H	S	Q	S	P	E	A	M	F	T	Q	V	C	G	L	R	T	V	M	P	S	N	P	Y	D	A	K	G	L	L	I	A	S	I	E	C
Template Known Secondary structure		G		G	G	G						T	T	T	T	T					T	T	T	S	S											.			S	S	S			T	T	S	S				T					T	S	T	T								S
Template Predicted Secondary structure																																				.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	K	S	R	V	P	F	I	H	F	F	D	G	F	R	T	S	H	E	I	N	K	I	V	P	L	A	D	D	T	I	L	D	L	M	P	Q	V	E	I	D	A	H	R	A	R	A	L	N	P	E	H	P	V	I	R	G	T	S	A	N	P	D	T	Y	F	Q	S	R	E	A	T	N	P	W	Y	N	A	V
Query Conservation
Alig confidence				.	.	.	.				.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.				.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	D	.	.	.	.	P	V	I	.	F	L	E	P	K	R	L	Y	N	G	P	F	D	G	H	H	D	R	P	V	T	P	W	S	K	H	P	H	S	A	V	P	D	G	Y	Y	T	V	P	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	S	.	.	.	.				.					G	G	G	S	S	S				S		S	S	S					G	G	G	S	T	T					S	S						T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.	.	.	.				.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		167	.					.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	H	V	E	Q	A	M	N	D	F	S	A	A	T	G	R	Q	Y	Q	P	F	E	Y	Y	G	H	P	Q	A	E	R	V	I	I	L	M	G	S	A	I	G	T	C	E	E	V	V	D	E	L	L	T	R	G	E	K	V	G	V	L	K	V	R	L	Y	R	P	F	S	A	K	H	L	L	Q	A	L	P	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	A	A	I	T	R	P	G	N	D	V	S	V	L	T	Y	G	T	T	V	Y	V	A	Q	V	A	A	E	E	S	.	.	.	G	V	D	A	E	V	I	D	L	R	S	L	W	P	L	D	L	D	T	I	V	E	S	V	K	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	S							T	T													.	.	.										S				S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Template SS confidence
																							213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.				.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370					.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																																																	.									.	.	.	.
Query SS confidence																																																	.									.	.	.	.
Query Sequence		S	V	R	S	V	A	V	L	D	R	T	K	E	P	G	A	Q	A	E	P	L	Y	L	D	V	M	T	A	L	A	E	A	F	N	N	G	E	R	E	T	L	P	R	V	I	G	G	.	R	Y	G	L	S	S	K	E	.	.	.	.	F	G	P	D	C	V	L	A	V	F	A	E	L	N	A	A
Query Conservation																																																	.									.	.	.	.
Alig confidence			.																	.	.	.	.																										.									.	.	.	.
Template Conservation			.																	.	.	.	.
Template Sequence		T	.	G	R	C	V	V	V	H	E	A	T	R	T	C	G	F	G	.	.	.	.	A	E	L	V	S	L	V	Q	E	H	C	F	H	H	L	E	A	P	I	E	R	V	T	G	W	D	T	P	Y	P	H	A	Q	E	W	A	Y	F	P	G	P	S	R	V	G	A	A	L	K	K	V	M	E	V
Template Known Secondary structure			.	S										S	T	T	S			.	.	.	.											S	T	T	T			S									S	S				S	T	T					S														T
Template Predicted Secondary structure			.																	.	.	.	.
Template SS confidence
		269		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.					.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions