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Job DescriptionP52647
Confidence99.71%DateThu Jan 5 12:05:59 GMT 2012
Rank23Aligned Residues510
% Identity10%Templatec1powA_
PDB info PDB header:oxidoreductase(oxygen as acceptor)Chain: A: PDB Molecule:pyruvate oxidase; PDBTitle: the refined structures of a stabilized mutant and of wild-type2 pyruvate oxidase from lactobacillus plantarum
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10..... ....20.........30.........40.........50.........60.........70...... ...80
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Query Sequence  IDGNGAVASVAF. RTSEVIAIYPITPSSTMAEQADAWAGNGLKNVWGDTPRVVEMQSEAGAIATVHGALQTGAL. . STSF
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Template Sequence  ILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDR. . . . . . . . . IHYIQVRHEEVGAMAAAADAKLTGKIGVCFG
Template Known Secondary structure  TT




GGGTTTT.........S
SSSS
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   11........20.........30.........40.........50 .........60.........70.........80.
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  TSSQGLLLMIPTLYKLAGELTPFVLHVAARTVATHALSIFGDHSDVMAVRQTGCAMLCAANVQEAQDFALISQIATLKSR
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Template Sequence  SAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQ
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TTTTTT



TTTTTS

TT



TTT


SSST
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   82.......90.........100.........110.........120.........130.........140.........150.........160.
 
   161........170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  VPFIHFFDGFRTSHEINKIVPLADDTILDLMPQVEIDAHRARALNPEHPVIRGTSANPDTYFQSREATNPWYNAVYDHVE
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Template Sequence  GVAVVQIPVDLPWQQIPAEDWYASANSYQTPLLPEPD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VQAVT
Template Known Secondary structure  STTGGGSGGG



GGG









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   162.......170.........180.........190........ .200...
 
   241........250.........260.........270.........280.........290... ......300.......
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Query Sequence  QAMNDFSAATGRQYQPFEYYGHPQAERVIILMGSAIGTCEEVVDELLTRGEKV. . . . . . . . . . . . . GVLKVRLYRPFSAK
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Template Sequence  RLTQTLL. . . . . . . . . . . . . . . AAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVADRYPAYLGSANRVAQK
Template Known Secondary structure  ...............T
SS
GGGGGGT


GGGTTSS
TT
TTB



SSS

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   204.....210 .........220.........230.........240.........250.........260........
 
   308.310.........320.........330.........340.........350.........360.........370.. .......380..
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Query Sequence  HLLQALPGSVRSVAVLDRTKEPGAQAEPLYLDVMTALAEAFNNGERETLPRVIGGRYGLSSKEFG. . . . . PDCVLAVFAE
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Template Sequence  PANEALAQA. DVVLFVGNNYPF. . . . . . . . AEVSKAFKNTRYFLQIDIDPAKLGKRHK. . . TDIAVLADAQKTLAAILAQ
Template Known Secondary structure 
.SS


TT........TTTTT
S
S
GGGTTSSS
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S
S
T
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   269270....... ..280......... 290.........300.........310....... ..320.........330......
 
   383......390.........400.........410.........420.........430.........440.........450.........460..
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Query Sequence  LNAAKPKARFTVGIYDDVTNLSLPLPENTLPNSAKLEALFYGLGSDGSVSATKNNIKIIGNSTPWYAQGYFVYDSKKAGG
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Template Sequence  VSERESTPWWQANLANVKNWRAYLASLEDKQEGPLQAYQVLRA. . . . . VNKIAEPDAIYSIDVGDINLNANRHLKLTPSN
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T

SSB

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TT

SS



TT
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   337..340.........350.........360.........370......... 380.........390.........400.........410.
 
   463......470.........480.........490.........500.........510.........520.........530.........540..
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Query Sequence  LTVSHLRVSEQPIRSAYLISQADFVGCHQLQFIDKYQMAERLKPGGIFLLNTPYSADEVWSRLPQEVQAVLNQKKARFYV
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Template Sequence  RHITSNLFAT. . . . . . . . . . . . . . . . . MGVGIPGAIAAKLNYPER. . QVFNLAGDGGASMTM. QDLATQVQYHLPVINVV
Template Known Secondary structure 


SS

.................TTT
TTS..
G.GGTT

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   412.......420. ........430......... 440.........450.... .....460.........470.
 
   543......550 .........560.........570.........580.........590.........600. ........610....
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Query Sequence  INAAKIAR. . . . . . ECGLAARINTVMQMAFFHLTQILPGDSALAELQGAIAKSYSSKGQDLVERN. . WQALALARESVEE
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Template Sequence  FTNCQYGFIKDEQEDTNQNDFIGVEFND. . . . . . . . . . . . . . . . IDFSKIADGVHMQAFRVNKIEQLPDVFEQAKAIAQH
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SB

SS


SSB


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TT

BGGGTTT
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   472.......480.........490......... 500.........510.........520.........530.....
 
   615....620........
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Query Sequence  VPLQPVNPHSANRP
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Template Sequence  EPVLIDAVITGDRP
Template Known Secondary structure  S






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   536...540.........
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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