Job Description P0ADD7 Confidence 99.92% Date Thu Jan 5 11:20:44 GMT 2012 Rank 6 Aligned Residues 193 % Identity 16% Template c3q9sA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding response regulator; PDBTitle: crystal structure of rra(1-215) from deinococcus radiodurans Resolution 2.40 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																															.	.
Query SS confidence																																															.	.
Query Sequence		C	K	N	G	I	V	I	S	K	I	P	V	M	Q	A	G	L	K	E	V	M	R	T	H	F	P	E	Y	E	I	I	S	S	A	S	A	E	D	L	T	L	L	Q	L	R	.	.	R	S	G	L	V	I	A	D	L	A	G	E	S	E	D	P	R	S	V	C	E	H	Y	Y	S	L	I	S	Q	Y	R	E	I
Query Conservation																																															.	.
Alig confidence																										.	.						.														.	.																						.	.	.	.
Template Conservation																										.	.						.																																					.	.	.	.
Template Sequence		E	Q	R	I	L	V	I	E	D	D	H	D	I	A	N	V	L	R	X	D	L	T	D	A	.	.	G	Y	V	V	D	.	H	A	D	S	A	X	N	G	L	I	K	A	R	E	D	H	P	D	L	I	L	L	D	L	G	L	P	D	F	D	G	G	D	V	V	Q	.	.	.	.	R	L	R	K	N	S	A	L
Template Known Secondary structure										S														T	T	.	.	T					.			S	S											S			S								S											.	.	.	.				T	T
Template Predicted Secondary structure																										.	.						.																																					.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.					.	.	70	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.				.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																																							.	.	.
Query SS confidence																																																							.	.	.
Query Sequence		H	W	V	F	M	V	S	R	S	W	Y	S	Q	A	V	E	L	L	M	C	P	T	A	T	L	L	S	D	V	E	P	I	E	N	L	V	K	T	V	R	S	G	N	T	H	A	E	R	I	S	A	M	L	.	.	.	T	S	P	A	M	T	E	T	H	D	F	S	Y	R	S	V	I	L	T	L	S	E	R	K
Query Conservation																																																							.	.	.
Alig confidence																																																							.	.	.
Template Conservation
Template Sequence		P	I	I	V	L	T	A	R	D	T	V	E	E	K	V	R	L	L	G	L	G	A	D	D	Y	L	I	K	P	F	H	P	D	E	L	L	A	R	V	K	V	Q	L	R	Q	R	T	S	E	S	L	S	X	G	D	L	T	L	D	P	Q	K	R	L	V	T	Y	K	G	E	E	L	R	L	S	P	K	E	F	D
Template Known Secondary structure								S			S											T		S					S	S																			S						T	T					T	T	T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		161	.	.	.	.	.	.	.					.	170	.	.	.	.	.	.	.	.						.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure										.	.	.	.											.	.	.	.	.
Query SS confidence										.	.	.	.											.	.	.	.	.
Query Sequence		V	L	R	L	L	G	K	G	.	.	.	.	W	G	I	N	Q	I	A	S	L	L	.	.	.	.	.	K	K	S	N	K	T	I	S	A	Q	K	N	S	A	M	R	R	L	A	I	H	S	N	A	E	M	Y
Query Conservation										.	.	.	.											.	.	.	.	.
Alig confidence										.	.	.	.											.	.	.	.	.
Template Conservation
Template Sequence		I	L	A	L	L	I	R	Q	P	G	R	V	Y	S	R	Q	E	I	G	Q	E	I	W	Q	G	R	L	P	E	G	S	N	V	V	D	V	H	X	A	N	L	R	A	K	L	R	D	L	D	G	Y	G	L	L
Template Known Secondary structure									S	T	T														T	T		S		T	T		S																	S				S	S
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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