Job Description P0ADD7 Confidence 99.68% Date Thu Jan 5 11:20:44 GMT 2012 Rank 20 Aligned Residues 70 % Identity 19% Template c1h0mD_ PDB info PDB header:transcription/dna Chain: D: PDB Molecule:transcriptional activator protein trar; PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna Resolution 3.0 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	D	F	S	Y	R	S	V	I	L	T	L	S	E	R	K	V	L	R	L	L	G	K	G	W	G	I	N	Q	I	A	S	L	L	K	K	S	N	K	T	I	S	A	Q	K	N	S	A	M	R	R	L	A	I	H	S	N	A	E	M	Y	A	W	I	N	S	A	Q	G	A	R	E	L
Query Conservation
Alig confidence																																																																	.	.	.
Template Conservation																																																																	.	.	.
Template Sequence		T	P	T	A	E	D	A	A	W	L	D	P	K	E	A	T	Y	L	R	W	I	A	V	G	K	T	X	E	E	I	A	D	V	E	G	V	K	Y	N	S	V	R	V	K	L	R	E	A	X	K	R	F	D	V	R	S	K	A	H	L	T	A	L	.	.	.	A	I	R	R	K	L	I
Template Known Secondary structure				S		B																	T	T	T										T	T																		T		S	S								.	.	.				T	T
Template Predicted Secondary structure																																																																	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.				.	.	230	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions