Return to main results Retrieve Phyre Job Id

Job DescriptionP0A976
Confidence99.71%DateThu Jan 5 11:09:32 GMT 2012
Rank12Aligned Residues66
% Identity24%Templatec2ytyA_
PDB info PDB header:rna binding proteinChain: A: PDB Molecule:cold shock domain-containing protein e1; PDBTitle: solution structure of the fourth cold-shock domain of the human2 kiaa0885 protein (unr protein)
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60. ........70
Predicted Secondary structure 



























.

Query SS confidence 



























































.








Query Sequence  SRKMTGIVKTFDGKSGKGLITPSDGRIDVQLHVSALNLRDAEEITTGLRVEFCRINGLRG. PSAANVYLS
Query Conservation       
 

     





   

  


 
 
 
       
  
  
 
      

.  
  
 
 
Alig confidence 












..






















.




















.








Template Conservation    
  
 
   
 ..




  
    




 
    .    
  

 
 
 
     

  
  
   
Template Sequence  SKRLLGYVATLKD. . NFGFIETANHDKEIFFHYSEFSG. DVDSLELGDMVEYSLSKGKGNKVSAEKVNKT
Template Known Secondary structure 



S..S
SSSS
TTT

S.
TTT

TT





S
S

B

S

Template Predicted Secondary structure 


..










.














Template SS confidence 





































































   16...20........ .30.........40.........50. ........60.........70.........80..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions