Job Description P10378 Confidence 100.00% Date Thu Jan 5 11:32:10 GMT 2012 Rank 31 Aligned Residues 340 % Identity 15% Template c3qovD_ PDB info PDB header:ligase Chain: D: PDB Molecule:phenylacetate-coenzyme a ligase; PDBTitle: crystal structure of a hypothetical acyl-coa ligase (bt_0428) from2 bacteroides thetaiotaomicron vpi-5482 at 2.20 a resolution Resolution 2.20 Å

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		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																																														.	.
Query SS confidence																																														.	.
Query Sequence		A	T	P	S	P	A	D	E	V	A	Y	F	Q	L	S	G	G	T	T	G	T	P	K	L	I	P	R	T	H	N	D	Y	Y	Y	S	V	R	R	S	V	E	I	C	Q	.	.	F	T	Q	Q	T	R	Y	L	C	A	I	P	A	A	H	N	Y	A	M	S	S	P	G	S	L	G	V	F	L	A	G	G	T	V
Query Conservation																																														.	.
Alig confidence																																														.	.
Template Conservation
Template Sequence		Y	P	F	G	L	V	A	G	D	X	K	R	D	G	V	R	I	H	S	S	N	P	T	V	I	V	H	S	Q	H	D	L	D	S	W	A	N	L	V	A	R	C	L	Y	X	V	G	I	R	K	T	D	V	F	Q	N	S	S	G	Y	G	X	F	T	G	G	L	G	F	Q	Y	G	A	E	R	L	G	C	L	T
Template Known Secondary structure		T	T	T	T	T			S																																						T	T			T	T	S						S			T	T															T
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	A	A	D	P	S	A	T	L	C	F	P	L	I	E	K	H	Q	V	N	V	T	A	L	V	P	P	A	V	S	L	W	L	Q	A	L	I	E	G	E	S	R	A	Q	L	A	S	L	K	L	L	Q	V	G	G	A	R	L	S	A	T	L	A	A	R	I	P	A	E	I	G	C	Q	L	Q	Q	V	F	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	P	A	A	A	G	N	S	K	R	Q	I	K	F	I	S	D	F	K	T	T	A	L	H	A	I	P	S	Y	A	I	R	L	A	E	V	F	Q	E	E	G	I	D	P	R	E	T	T	L	K	T	L	V	I	G	A	E	P	H	T	D	E	Q	R	R	K	I	E	R	X	L	N	V	K	A	Y	N	S	F	G
Template Known Secondary structure						S														T																					T	T			T	T	S	S	S								S	S															T	S
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	E	G	L	V	N	Y	T	R	L	D	D	S	A	E	K	I	I	H	T	Q	G	Y	P	M	C	P	D	D	E	V	W	V	A	D	A	E	G	N	P	L	P	Q	G	E	V	G	R	L	M	T	R	G	P	Y	T	F	R	G	Y	Y	K	S	P	Q	H	N	A	S	A	F	D	A	N	G	F	Y	C	S
Query Conservation
Alig confidence																		.	.	.																																																	.	.	.	.
Template Conservation																		.	.	.																																																	.	.	.	.
Template Sequence		X	T	E	X	N	G	P	G	V	A	F	E	C	Q	E	Q	.	.	.	N	G	X	H	F	W	E	D	C	Y	L	V	E	I	I	D	P	E	T	G	E	P	V	P	E	G	E	I	G	E	L	V	L	T	T	L	D	R	E	X	X	P	L	I	R	Y	R	T	.	.	.	.	R	D	L	T	R	I	L	P	G
Template Known Secondary structure			G	G	G	T									T	T		.	.	.	S	S					T	T	T								T	T	T		S	B		S	T	T										S	S			S	S				S				.	.	.	.									S
Template Predicted Secondary structure																		.	.	.																																																	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.				.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.					.	.	.	.	.	.	.	310	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.				.	.	.	.	.	.	490
Predicted Secondary structure																																																																								.	.	.
Query SS confidence																																																																								.	.	.
Query Sequence		G	D	L	I	S	I	D	P	E	G	Y	I	T	V	Q	G	R	E	K	D	Q	I	N	R	G	G	E	K	I	A	A	E	E	I	E	N	L	L	L	R	H	P	A	V	I	Y	A	A	L	V	S	M	E	D	E	L	M	G	E	K	S	C	A	Y	L	V	V	K	E	P	.	.	.	L	R	A	V	Q	V	R
Query Conservation																																																																								.	.	.
Alig confidence																																																																								.	.	.
Template Conservation
Template Sequence		K	C	P	C	G	R	T	H	L	R	I	D	R	I	K	G	R	S	D	D	X	F	I	I	K	G	V	N	I	F	P	X	Q	V	E	K	I	L	V	Q	F	P	E	L	G	S	N	Y	L	I	T	L	E	T	N	Q	D	E	X	I	V	E	V	E	L	S	D	L	S	T	D	N	Y	I	E	L	E	K	I	R
Template Known Secondary structure				T	T				S										S	T	T					T	T													T	T		T	T																								S	S
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.			.	.	.	.	.	.	.	.	520	.	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		R	F	L	R	E	Q	G	I	A	E	F	K	L	P	D	R	V	E	C	V	D	.	.	S	L	P	L	T	A	V	G	K	V	D	K
Query Conservation																							.	.
Alig confidence																							.	.						.
Template Conservation																														.
Template Sequence		R	D	I	I	R	Q	L	K	D	E	I	L	V	T	P	K	V	K	L	V	K	K	G	S	L	P	Q	S	.	E	G	K	A	V	R
Template Known Secondary structure													S	S									T	T		S				.	S	S	S
Template Predicted Secondary structure																														.
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.		.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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