Job Description P10378 Confidence 100.00% Date Thu Jan 5 11:32:10 GMT 2012 Rank 7 Aligned Residues 512 % Identity 20% Template c3ni2A_ PDB info PDB header:ligase Chain: A: PDB Molecule:4-coumarate:coa ligase; PDBTitle: crystal structures and enzymatic mechanisms of a populus tomentosa 4-2 coumarate:coa ligase Resolution 1.90 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.										.	.
Query SS confidence																										.	.										.	.
Query Sequence		F	A	R	R	Y	R	E	K	G	Y	W	Q	D	L	P	L	T	D	I	L	T	R	H	A	.	.	A	S	D	S	I	A	V	I	D	.	.	G	E	R	Q	L	S	Y	R	E	L	N	Q	A	A	D	N	L	A	C	S	L	R	R	Q	G	I	K	P	G	E	T	A	L	V	Q	L	G	N	V	A	E	L	Y
Query Conservation																										.	.										.	.
Alig confidence																										.	.										.	.
Template Conservation
Template Sequence		F	R	S	K	L	P	D	I	Y	I	P	K	N	L	P	L	H	S	Y	V	L	E	N	L	S	N	H	S	S	K	P	C	L	I	N	G	A	N	G	D	V	Y	T	Y	A	D	V	E	L	T	A	R	R	V	A	S	G	L	N	K	I	G	I	Q	Q	G	D	V	I	M	L	F	L	P	S	S	P	E	F	V
Template Known Secondary structure		B			S	S							S	S								T	T	T	G	G	G	S	T	T	S						T	T	T																							T	T			T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	F	F	A	L	L	K	L	G	V	A	P	V	L	A	L	F	S	H	Q	R	S	E	L	N	A	Y	A	S	Q	I	E	P	A	L	L	I	A	D	R	Q	H	A	L	F	S	G	D	D	F	L	N	T	F	V	T	E	H	S	S	I	R	V	V	Q	L	L	N	D	S	G	E	H	N	L	Q	D	A	I
Query Conservation
Alig confidence																																																										.	.	.	.	.
Template Conservation																																																										.	.	.	.	.
Template Sequence		L	A	F	L	G	A	S	H	R	G	A	I	I	T	A	A	N	P	F	S	T	P	A	E	L	A	K	H	A	K	A	S	R	A	K	L	L	I	T	Q	A	C	Y	Y	E	K	V	K	D	F	A	R	E	S	D	V	.	.	.	.	.	K	V	M	C	V	D	S	A	P	D	G	C	L	H	F	S	E	L	T
Template Known Secondary structure											T								T	T														T								G	G	G	T											T		.	.	.	.	.					S	S				T	T				T
Template Predicted Secondary structure																																																										.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.						.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																																						.	.
Query SS confidence																																																						.	.
Query Sequence		N	H	P	A	E	D	F	T	A	T	P	S	P	A	D	E	V	A	Y	F	Q	L	S	G	G	T	T	G	T	P	K	L	I	P	R	T	H	N	D	Y	Y	Y	S	V	R	R	S	V	E	I	C	Q	.	.	F	T	Q	Q	T	R	Y	L	C	A	I	P	A	A	H	N	Y	A	M	S	S	P	G	S	L	G
Query Conservation																																																						.	.
Alig confidence																																																						.	.
Template Conservation
Template Sequence		Q	A	D	E	N	E	A	P	Q	V	D	I	S	P	D	D	V	V	A	L	P	Y	S	S	G	T	T	G	L	P	K	G	V	M	L	T	H	K	G	L	I	T	S	V	A	Q	Q	V	D	G	D	N	P	N	L	Y	F	H	S	E	D	V	I	L	C	V	L	P	M	F	H	I	Y	A	L	N	S	I	M	L
Template Known Secondary structure		T	S		G	G	G								T	T	S									T	T	S	S	S																					S	S	S		S	S				T	T							S		T	T	S							T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	L	A	G	G	T	V	V	L	A	A	D	P	S	A	T	L	C	F	P	L	I	E	K	H	Q	V	N	V	T	A	L	V	P	P	A	V	S	L	W	L	Q	A	L	I	E	G	E	S	R	A	Q	L	A	S	L	K	L	L	Q	V	G	G	A	R	L	S	A	T	L	A	A	R	I	P	A	E	I	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	G	L	R	V	G	A	P	I	L	I	M	P	K	F	E	I	G	S	L	L	G	L	I	E	K	Y	K	V	S	I	A	P	V	V	P	P	V	M	M	S	I	A	K	S	P	D	L	D	K	H	D	L	S	S	L	R	M	I	K	S	G	G	A	P	L	G	K	E	L	E	D	T	V	R	A	K	F	P	Q
Template Known Secondary structure							T							S	S														T																T		S		G	G	G	S			T	T								S	S															T	T
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.					.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure																						.	.	.	.
Query SS confidence																						.	.	.	.
Query Sequence		C	Q	L	Q	Q	V	F	G	M	A	E	G	L	V	N	Y	T	R	L	D	.	.	.	.	D	S	A	E	K	I	I	H	T	Q	G	Y	P	M	C	P	D	D	E	V	W	V	A	D	A	E	G	N	P	L	P	Q	G	E	V	G	R	L	M	T	R	G	P	Y	T	F	R	G	Y	Y	K	S	P	Q	H	N
Query Conservation																						.	.	.	.
Alig confidence																						.	.	.	.
Template Conservation
Template Sequence		A	R	L	G	Q	G	Y	G	M	T	E	A	G	P	V	L	A	M	C	L	A	F	A	K	E	P	F	D	I	K	P	G	A	C	G	T	V	V	R	N	A	E	M	K	I	V	D	P	E	T	G	A	S	L	P	R	N	Q	P	G	E	I	C	I	R	G	D	Q	I	M	K	G	Y	L	N	D	P	E	A	T
Template Known Secondary structure		S									G	G	G	S	S						G	G	G	S	S	S						T	T							S	S								T	T	T			B			T	T									S	T	T	S		S			T	T
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	A	F	D	A	N	G	F	Y	C	S	G	D	L	I	S	I	D	P	E	G	Y	I	T	V	Q	G	R	E	K	D	Q	I	N	R	G	G	E	K	I	A	A	E	E	I	E	N	L	L	L	R	H	P	A	V	I	Y	A	A	L	V	S	M	E	D	E	L	M	G	E	K	S	C	A	Y	L	V	V	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	R	T	I	D	K	E	G	W	L	H	T	G	D	I	G	Y	I	D	D	D	D	E	L	F	I	V	D	R	L	K	E	L	I	K	Y	K	G	F	Q	V	A	P	A	E	L	E	A	L	L	I	A	H	P	E	I	S	D	A	A	V	V	G	L	K	D	E	D	A	G	E	V	P	V	A	F	V	V	K	S
Template Known Secondary structure					B		T	T	S												T	T	S									S						T	T														T	S	T	T												T	T	T
Template Predicted Secondary structure
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
		482	.			.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		E	P	.	.	L	R	A	V	Q	V	R	R	F	L	R	E	Q	G	I	A	E	F	K	L	P	D	R	V	E	C	V	D	S	L	P	L	T	A	V	G	K	V	D	K	K	Q	L	R	Q	W
Query Conservation				.	.
Alig confidence				.	.														.
Template Conservation																			.
Template Sequence		E	K	S	Q	A	T	E	D	E	I	K	Q	Y	I	S	K	Q	.	V	I	F	Y	K	R	I	K	R	V	F	F	I	E	A	I	P	K	A	P	S	G	K	I	L	R	K	N	L	K	E	K
Template Known Secondary structure		T	T														T	T	.	S		G	G	G			S						S				B		T	T	S		B							T
Template Predicted Secondary structure																			.
Template SS confidence
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500		.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.