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Job DescriptionP10378
Confidence100.00%DateThu Jan 5 11:32:10 GMT 2012
Rank17Aligned Residues498
% Identity16%Templatec3kxwA_
PDB info PDB header:ligaseChain: A: PDB Molecule:saframycin mx1 synthetase b; PDBTitle: the crystal structure of fatty acid amp ligase from legionella2 pneumophila
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30..... ....40...... ...50.........60.........70.........80.........90......
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Query Sequence  QDLPLTDILTRHA. . ASDSIAVIDGE. . . . RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKL
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Template Sequence  QCQSLVDVVRLRALHSPNKKSCTFLNKELEETXTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYA
Template Known Secondary structure  T
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TTSTTTT

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   7..10.........20.........30.........40.........50.........60.........70.........80......
 
   97..100......... 110.........120.........130.........140.........150.........160.........170...
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Query Sequence  GVAPVLALFSHQR. . . SELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAED
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Template Sequence  GCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLXIADHIKKFTANPKFLKIP. . . . . . . . . . . . . . . AIALESIELNRSSS
Template Known Secondary structure  T




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TT...............GGG

GGGGGG
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   87..90.........100.........110.........120.........130....... ..140.........150.
 
   174.....180.........190.........200.........210.........220.........230.........240.........250...
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Query Sequence  FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTV
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Template Sequence  WQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFHXNDETIIFSWLPPHHDXGLIGCILTPIYGGIQAI
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TTS
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TT

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   157..160.........170.........180.........190.........200.........210.........220.........230......
 
   254..... 260.........270.........280.........290... ......300.........310.........320....
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Query Sequence  VLAADP. . . SATLCFPLIEKHQVNVTALVPPAVSLWLQALIEG. ESRAQLASLKLLQVGGARLSATLAARIPAEI. . . . .
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Template Sequence  XXSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETXEHFYQAFKEFGF
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TT
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GGGGTT


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GGGT
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   237..240.........250.........260.........270.........280.........290.........300.........310......
 
   325....330.........340......... 350.........360.........370.........
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Query Sequence  . GCQLQQVFGMAEGLVNYTRLDDSAE. . . . . . . . . . . . . . . . . . . . . . . . KIIHTQGYPMCPDDEVWVADAEGNPLPQGE
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Template Sequence  RKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFDQ
Template Known Secondary structure 
GGG
GGGSS

TTS



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SSSB

B

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TTB
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   317..320.........330.........340.........350.........360.........370.........380.........390......
 
   380.........390.........400..... ....410.........420.........430.........440.........450.....
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Query Sequence  VGRLMTRGPYTFRGYYKSPQHNASAF. . . . DANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHP
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Template Sequence  VGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDAIYLRTGDLGFLHENELYVTGRIKDLIIIYGKNHYPQDIEFSLXHSP
Template Known Secondary structure 
STTS


BTT

B

TT


BTTSS
TTSG
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   397..400.........410.........420.........430.........440.........450.........460.........470......
 
   456 ...460.........470.........480..... ....490.........500.........510.........520.....
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Query Sequence  A. . . VIYAALVSMEDELMGEKSCAYLVVKEPLR. . . . . . . AVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQ
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Template Conservation   
  
    
                             
   
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Template Sequence  LHHVLGKCAAFVIQEEHEYKLTVXCEVKNRFXDDVAQDNLFNEIFELVYEN. HQLEVHTIVLIPLKAXPHTTSGKIRRNF
Template Known Secondary structure  GGGGTTS
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   480.........490.........500.........510.........520.........530 .........540.........550........
 
   526...530......
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Query Sequence  LRQWLASRASA
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Template Sequence  CRKHLLDKTLP
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   559560.........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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