Job Description P10378 Confidence 100.00% Date Thu Jan 5 11:32:10 GMT 2012 Rank 27 Aligned Residues 390 % Identity 22% Template c3ivrA_ PDB info PDB header:ligase Chain: A: PDB Molecule:putative long-chain-fatty-acid coa ligase; PDBTitle: crystal structure of putative long-chain-fatty-acid coa ligase from2 rhodopseudomonas palustris cga009 Resolution 2.00 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		Q	D	L	P	L	T	D	I	L	T	R	H	A	.	.	A	S	D	S	I	A	V	I	D	G	E	R	Q	L	S	Y	R	E	L	N	Q	A	A	D	N	L	A	C	S	L	R	R	Q	G	I	K	P	G	E	T	A	L	V	Q	L	G	N	V	A	E	L	Y	I	T	F	F	A	L	L	K	L	G	V	A	P
Query Conservation															.	.
Alig confidence															.	.
Template Conservation
Template Sequence		H	D	F	T	L	A	D	V	Y	R	R	N	A	A	L	F	P	D	R	T	A	F	M	V	D	G	V	R	L	T	H	R	D	Y	L	A	R	A	E	R	L	A	S	G	L	L	R	D	G	V	H	T	G	D	R	V	A	I	L	S	Q	N	C	S	E	M	I	E	L	I	G	A	V	A	L	I	G	A	I	L
Template Known Secondary structure		T															S	T	T	S						T	T																						T	T			T	T									S														T	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	A	L	F	S	H	Q	R	S	E	L	N	A	Y	A	S	Q	I	E	P	A	L	L	I	A	D	R	Q	H	A	L	F	S	G	D	D	F	L	N	T	F	V	T	E	H	S	S	I	R	V	V	Q	L	L	N	D	S	G	E	H	N	L	Q	D	A	I	N	H	P	A	E	D	F	T	A	T	P	S	P
Query Conservation
Alig confidence																																																																	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.
Template Sequence		L	P	V	N	Y	R	L	N	A	D	E	I	A	F	V	L	G	D	G	A	P	S	V	V	V	A	G	T	D	Y	R	D	I	V	A	G	V	L	P	S	L	G	G	V	K	K	A	Y	A	I	G	D	G	S	G	P	F	A	P	F	K	D	L	.	.	.	.	.	.	.	A	S	D	T	P	F	S	A	P	E
Template Known Secondary structure						T	T	S																					S	T	T								G	G	G		S	S							S	S				S	S				G	G	G	T	.	.	.	.	.	.	.				S
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.								.	.	150	.	.	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	E	V	A	Y	F	Q	L	S	G	G	T	T	G	T	P	K	L	I	P	R	T	H	N	D	Y	Y	Y	S	V	R	R	S	V	E	I	C	Q	F	T	Q	Q	T	R	Y	L	C	A	I	P	A	A	H	N	Y	A	M	S	S	P	G	S	L	G	V	F	L	A	G	G	T	V	V	L	A	A	D	P	S
Query Conservation
Alig confidence																																																				.	.
Template Conservation																																																				.	.
Template Sequence		F	G	A	A	D	G	F	V	I	I	H	T	A	A	G	R	P	R	G	A	L	I	S	Q	G	N	L	L	I	A	Q	S	S	L	V	D	A	W	R	L	T	E	A	D	V	N	L	G	M	L	.	.	P	L	F	H	V	T	G	L	G	L	M	L	T	L	Q	Q	A	G	G	A	S	V	I	A	A	K	F	D
Template Known Secondary structure				T	T	S																																	T	T			T	T							S	.	.		T	T	S														T							S	S
Template Predicted Secondary structure																																																				.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.			.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	L	C	F	P	L	I	E	K	H	Q	V	N	V	T	A	L	V	P	P	A	V	S	L	W	L	Q	A	L	I	E	G	E	S	R	A	Q	L	A	S	L	K	L	L	Q	V	G	G	A	R	L	S	A	T	L	A	A	R	I	P	A	E	I	G	C	Q	L	Q	Q	V	F	G	M	A	E	G	L	V	N
Query Conservation
Alig confidence																																								.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.
Template Sequence		P	A	Q	A	A	R	D	I	E	A	H	K	V	T	V	M	A	E	F	A	P	M	L	G	N	I	L	D	Q	A	A	P	A	Q	L	A	S	L	.	.	.	.	.	.	R	A	V	T	G	L	D	T	P	E	T	I	E	R	F	E	A	T	C	P	N	A	T	F	W	A	T	F	G	Q	S	E	T	S	G	L
Template Known Secondary structure													T								T	T											G	G	G	G	T	T		.	.	.	.	.	.																				T	T										G	G	G	T
Template Predicted Secondary structure																																								.	.	.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.							.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	T	R	L	D	D	S	A	E	K	I	I	H	T	Q	G	Y	P	M	C	P	D	D	E	V	W	V	A	D	A	E	G	N	P	L	P	Q	G	E	V	G	R	L	M	T	R	G	P	Y	T	F	R	G	Y	Y	K	S	P	Q	H	N	A	S	A	F	D	A	N	G	F	Y	C	S	G	D	L	I	S	I	D
Query Conservation
Alig confidence									.	.	.																																																									.
Template Conservation									.	.	.																																																									.
Template Sequence		S	T	F	A	P	Y	R	.	.	.	D	R	P	K	S	A	G	R	P	L	F	W	R	T	V	A	V	V	D	A	E	D	R	P	L	P	P	G	E	V	G	E	I	V	L	R	G	P	T	V	F	K	G	Y	W	N	N	A	A	A	T	Q	H	A	F	R	.	N	G	W	H	H	T	G	D	M	G	R	F	D
Template Known Secondary structure							G	G	.	.	.	G	S	T	T	S						T	T								T	T	S		B			T	T									S	T	T	S					T	T									T	G	.	G	G	S
Template Predicted Secondary structure									.	.	.																																																									.
Template SS confidence
		312	.	.	.	.	.	.				.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.		.	.	.	.	.	380	.	.	.	.	.	.	.
		421	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	G	Y	I	T	V	Q	G	R	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	D	G	Y	L	F	Y	A	G	R	A
Template Known Secondary structure		T	T	S
Template Predicted Secondary structure
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions