Job Description P10378 Confidence 100.00% Date Thu Jan 5 11:32:10 GMT 2012 Rank 10 Aligned Residues 499 % Identity 18% Template c3etcB_ PDB info PDB header:ligase Chain: B: PDB Molecule:amp-binding protein; PDBTitle: 2.1 a structure of acyl-adenylate synthetase from methanosarcina2 acetivorans containing a link between lys256 and cys298 Resolution 2.10 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.						.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																												.	.										.	.	.	.	.
Query SS confidence																												.	.										.	.	.	.	.
Query Sequence		E	E	F	A	R	R	Y	R	E	K	G	Y	W	Q	D	L	P	L	T	D	I	L	T	R	H	A	.	.	A	S	D	S	I	A	V	I	D	.	.	.	.	.	G	E	R	Q	L	S	Y	R	E	L	N	Q	A	A	D	N	L	A	C	S	L	R	R	Q	G	I	K	P	G	E	T	A	L	V	Q	L	G	N
Query Conservation																												.	.										.	.	.	.	.
Alig confidence																												.	.										.	.	.	.	.
Template Conservation
Template Sequence		E	D	F	Q	E	N	F	K	I	L	V	P	E	N	F	N	F	A	Y	D	V	V	D	V	Y	A	R	D	S	P	E	K	L	A	M	I	W	C	D	D	Y	G	N	E	K	I	F	T	F	K	D	L	K	Y	Y	S	D	K	A	A	N	F	F	V	K	H	G	I	G	K	G	D	Y	V	M	L	T	L	K	S
Template Known Secondary structure										B				S	S							T								S	T	T	S								S	S	S																								T	T			T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	E	L	Y	I	T	F	F	A	L	L	K	L	G	V	A	P	V	L	A	L	F	S	H	Q	R	S	E	L	N	A	Y	A	S	Q	I	E	P	A	L	L	I	A	D	R	Q	H	A	L	F	S	G	D	D	F	L	N	T	F	V	T	E	H	S	S	I	R	V	V	Q	L	L	N	D	S	G	E	H	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	Y	D	F	W	Y	C	M	L	G	L	H	K	L	G	A	I	A	V	P	A	T	H	M	L	K	T	R	D	I	V	Y	R	I	E	K	A	G	L	K	M	I	V	C	I	A	E	D	D	V	P	E	Q	V	D	E	A	H	A	E	C	G	D	I	P	L	K	K	A	K	V	G	G	D	V	L	E	G	W	I
Template Known Secondary structure			T													T								T	T														T		S						S	S	T	T														S									S	S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
							163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	L	Q	D	A	I	N	H	P	A	E	D	F	T	A	T	P	S	P	A	D	E	V	A	Y	F	Q	L	S	G	G	T	T	G	T	P	K	L	I	P	R	T	H	N	D	Y	Y	Y	S	V	R	R	S	V	E	I	C	Q	F	T	Q	Q	T	R	Y	L	C	A	I	P	A	A	H	N	Y	A
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.
Template Conservation
Template Sequence		D	F	R	K	E	L	E	E	S	S	P	I	F	E	R	P	T	G	E	V	S	T	K	N	E	D	I	C	L	V	Y	F	S	S	G	T	A	G	F	P	K	M	V	E	H	D	N	T	Y	P	L	G	H	I	L	T	A	K	Y	W	Q	N	V	E	D	D	G	L	H	Y	T	V	A	D	S	G	W	G	K	C
Template Known Secondary structure										S		S							G	G	G	S			T	T	S										S	S	S	S								T	T											T	T	S				T	T									T	T	S	T
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		M	S	S	P	G	S	L	G	V	F	L	A	G	G	T	V	V	L	A	A	.	D	P	S	A	T	L	C	F	P	L	I	E	K	H	Q	V	N	V	T	A	L	V	P	P	A	V	S	L	W	L	Q	A	L	I	E	G	E	S	R	A	Q	L	A	S	L	K	L	L	Q	V	G	G	A	R	L	S	A	T	L
Query Conservation																						.
Alig confidence																						.																																.	.	.
Template Conservation																																																						.	.	.
Template Sequence		V	W	G	K	L	Y	G	Q	W	I	A	G	C	A	V	F	V	Y	D	Y	D	R	F	E	A	K	N	M	L	E	K	A	S	K	Y	G	V	T	T	F	C	A	P	P	T	I	Y	R	F	L	I	K	.	.	.	E	D	L	S	H	Y	N	F	S	T	L	K	Y	A	V	V	A	G	E	P	L	N	P	E	V
Template Known Secondary structure					T	T						T	T									S	S														T																	.	.	.	S		T	T	T	T	T			S								S	S
Template Predicted Secondary structure																																																						.	.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.				310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.						.	390	.
Predicted Secondary structure																																																																										.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.
Query Sequence		A	A	R	I	P	A	E	I	G	C	Q	L	Q	Q	V	F	G	M	A	E	G	L	V	N	Y	T	R	L	D	D	S	A	E	K	I	I	H	T	Q	G	Y	P	M	C	P	D	D	E	V	W	V	A	D	A	E	G	N	P	L	P	Q	G	E	V	G	R	L	M	T	R	G	P	.	.	.	.	.	Y	T	F
Query Conservation																																																																										.	.	.	.	.
Alig confidence																																	.	.																																								.	.	.	.	.
Template Conservation																																	.	.
Template Sequence		F	N	R	F	L	E	F	T	G	I	K	L	M	E	G	F	G	Q	T	E	T	V	V	T	I	A	T	F	P	W	M	.	.	E	P	K	P	G	S	I	G	K	P	T	P	G	Y	K	I	E	L	M	D	R	D	G	R	L	C	E	V	G	E	E	G	E	I	V	I	N	T	M	E	G	K	P	V	G	L	F
Template Known Secondary structure										S										T	T	S	S							T	T	S	.	.				T	T			B				T	T								T	T	S		B			T	T										T	T				T	T
Template Predicted Secondary structure																																	.	.
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.			.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	Y	Y	K	S	P	Q	H	N	A	S	A	F	D	A	N	G	F	Y	C	S	G	D	L	I	S	I	D	P	E	G	Y	I	T	V	Q	G	R	E	K	D	Q	I	N	R	G	G	E	K	I	A	A	E	E	I	E	N	L	L	L	R	H	P	A	V	I	Y	A	A	L	V	S	M	E	D	E	L	M	G
Query Conservation
Alig confidence															.
Template Conservation															.
Template Sequence		V	H	Y	G	K	D	P	E	R	T	E	E	T	.	W	H	D	G	Y	Y	H	T	G	D	M	A	W	M	D	E	D	G	Y	L	W	F	V	G	R	A	D	D	I	I	K	T	S	G	Y	K	V	G	P	F	E	V	E	S	A	L	I	Q	H	P	A	V	L	E	C	A	I	T	G	V	P	D	P	V	R	G
Template Known Secondary structure					T	T									.			T	T												T	T	S								S	S	S					T	T													T	T	S	T	T												T	T	T
Template Predicted Secondary structure															.
Template SS confidence
		413	.	.	.	.	.	.	420	.	.	.	.	.		.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
		472	.	.	.	.	.	.	.	480	.	.	.	.	.						.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.
Query SS confidence																.	.	.	.	.
Query Sequence		E	K	S	C	A	Y	L	V	V	K	E	P	L	R	.	.	.	.	.	A	V	Q	V	R	R	F	L	R	E	Q	G	I	A	E	F	K	L	P	D	R	V	E	C	V	D	S	L	P	L
Query Conservation																.	.	.	.	.
Alig confidence																.	.	.	.	.												.
Template Conservation																																.
Template Sequence		Q	V	I	K	A	T	I	V	L	T	K	D	Y	T	P	S	D	S	L	K	N	E	L	Q	D	H	V	K	N	V	.	T	A	P	Y	K	Y	P	R	I	I	E	F	V	P	E	L	P	K
Template Known Secondary structure												T	T																			.	S		G	G	G			S						S
Template Predicted Secondary structure																																.
Template SS confidence
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.		.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.