Job Description P10378 Confidence 100.00% Date Thu Jan 5 11:32:10 GMT 2012 Rank 6 Aligned Residues 492 % Identity 18% Template c3e7wA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine--poly(phosphoribitol) ligase subunit 1; PDBTitle: crystal structure of dlta: implications for the reaction2 mechanism of non-ribosomal peptide synthetase (nrps)3 adenylation domains Resolution 2.28 Å

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		25	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure													.	.																																	.
Query SS confidence													.	.																																	.
Query Sequence		L	P	L	T	D	I	L	T	R	H	A	.	.	A	S	D	S	I	A	V	I	D	G	E	R	Q	L	S	Y	R	E	L	N	Q	A	A	D	N	L	A	C	S	L	R	R	.	Q	G	I	K	P	G	E	T	A	L	V	Q	L	G	N	V	A	E	L	Y	I	T	F	F	A	L	L	K	L	G	V	A	P	V
Query Conservation													.	.																																	.
Alig confidence													.	.																																	.
Template Conservation
Template Sequence		M	K	L	L	H	A	I	Q	T	H	A	E	T	Y	P	Q	T	D	A	F	R	S	Q	G	Q	S	L	T	Y	Q	E	L	W	E	Q	S	D	R	A	A	A	A	I	Q	K	R	I	S	G	E	K	K	S	P	I	L	V	Y	G	H	M	E	P	H	M	I	V	S	F	L	G	S	V	K	A	G	H	P	Y	I
Template Known Secondary structure															S	T	T	S						T	T																				T	T	T	S		S	S	S									S	S															T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	L	F	S	H	Q	R	S	E	L	N	A	Y	A	S	Q	I	E	P	A	L	L	I	A	D	R	Q	H	A	L	F	S	G	D	D	F	L	N	T	F	V	T	E	H	S	S	I	R	V	V	Q	L	L	N	D	S	G	E	H	N	L	Q	D	A	I	N	H	P	A	E	D	F	T	A	T	P	S	P	A
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	V	D	L	S	I	P	S	E	R	I	A	K	I	I	E	S	S	G	A	E	L	L	I	H	A	A	G	L	S	I	D	A	V	G	Q	Q	I	Q	T	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	E	L	L	E	N	E	G	G	S	V	S	Q	D	Q	W	V	K	E
Template Known Secondary structure					T	T	S													T							S	S	S			T	T					S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	S		S					G	G	G	S			T
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.																			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	V	A	Y	F	Q	L	S	G	G	T	T	G	T	P	K	L	I	P	R	T	H	N	D	Y	Y	Y	S	V	R	R	S	V	E	I	C	Q	F	T	Q	Q	T	R	Y	L	C	A	I	P	A	A	H	N	Y	A	M	S	S	P	G	S	L	G	V	F	L	A	G	G	T	V	V	L	A	A	D	P	S	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	E	T	F	Y	I	I	Y	T	S	G	S	T	G	N	P	K	G	V	Q	I	S	A	A	N	L	Q	S	F	T	D	W	I	C	A	D	F	P	V	S	G	G	K	I	F	L	N	Q	A	P	F	S	F	D	L	S	V	M	D	L	Y	P	C	L	Q	S	G	G	T	L	H	C	V	T	K	D	A	V	N	K
Template Known Secondary structure		T	S										T	T	S	S																						S	T	T	T	T	T							S		T	T	S	T												T	T													S
Template Predicted Secondary structure
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	C	F	P	L	I	E	K	H	Q	V	N	V	T	A	L	V	P	P	A	V	S	L	W	L	Q	A	L	I	E	G	E	S	R	A	Q	L	A	S	L	K	L	L	Q	V	G	G	A	R	L	S	A	T	L	A	A	R	I	P	A	E	I	G	C	Q	L	Q	Q	V	F	G	M	A	E	G	L	V	N	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	K	V	L	F	E	E	L	K	K	S	G	L	N	V	W	T	S	T	P	S	F	V	Q	M	C	L	M	D	P	G	F	S	Q	D	L	L	P	H	A	D	T	F	M	F	C	G	E	V	L	P	V	S	V	A	K	A	L	L	E	R	F	P	K	A	K	I	F	N	T	Y	G	P	T	E	A	T	V	A	V
Template Known Secondary structure															S														T	S	T	T		S	T	T	T		T	T								S	S															T	T										G	G	G	S	S		S
Template Predicted Secondary structure
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		342	.	.	.	.	.	.	.	350	.	.	.				.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.			.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure														.	.	.																																																			.	.
Query SS confidence														.	.	.																																																			.	.
Query Sequence		T	R	L	D	D	S	A	E	K	I	I	H	.	.	.	T	Q	G	Y	P	M	C	P	D	D	E	V	W	V	A	D	A	E	G	N	P	L	P	Q	G	E	V	G	R	L	M	T	R	G	P	Y	T	F	R	G	Y	Y	K	S	P	Q	H	N	A	S	.	.	A	F	D	A	N	G	F	Y	C	S	G	D	L
Query Conservation														.	.	.																																																			.	.
Alig confidence														.	.	.																																																			.	.
Template Conservation
Template Sequence		T	S	V	E	I	T	N	D	V	I	S	R	S	E	S	L	P	V	G	F	A	K	P	D	M	N	I	F	I	M	D	E	E	G	Q	P	L	P	E	G	E	K	G	E	I	V	I	A	G	P	S	V	S	R	G	Y	L	G	E	P	E	L	T	E	K	A	F	F	S	H	E	G	Q	W	A	Y	R	T	G	D
Template Known Secondary structure												T	T		S	S				B				T	T								T	T	S		B			T	T									S	T	T	S				B	T	T												S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.							.	.	.	.	490
Predicted Secondary structure																																																																							.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.
Query Sequence		I	S	I	D	P	E	G	Y	I	T	V	Q	G	R	E	K	D	Q	I	N	R	G	G	E	K	I	A	A	E	E	I	E	N	L	L	L	R	H	P	A	V	I	Y	A	A	L	V	S	M	E	D	E	L	M	G	E	K	S	C	A	Y	L	V	V	K	E	P	L	R	.	.	.	.	.	.	A	V	Q	V	R
Query Conservation																																																																							.	.	.	.	.	.
Alig confidence																																																																							.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	F	I	Q	D	G	Q	I	F	C	Q	G	R	L	D	F	Q	I	K	L	H	G	Y	R	M	E	L	E	E	I	E	F	H	V	R	Q	S	Q	Y	V	R	S	A	V	V	I	P	Y	Q	P	N	G	T	V	E	Y	L	I	A	A	I	V	P	E	E	H	E	F	E	K	E	F	Q	L	T	S	A	I	K
Template Known Secondary structure							T	T								S	S	S					T	T															S	T	T											S	S	S	S																S	S
Template Predicted Secondary structure
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	L	R	E	Q	G	I	A	E	F	K	L	P	D	R	V	E	C	V	D	S	L	P	L	T	A	V	G	K	V	D	K	K	Q	L	R	Q	W	L	A	S	R	A	S
Query Conservation
Alig confidence								.
Template Conservation								.
Template Sequence		K	E	L	A	A	S	.	L	P	A	Y	M	I	P	R	K	F	I	Y	Q	D	H	I	Q	M	T	A	N	G	K	I	D	R	K	R	I	G	E	E	V	L	V	R	S	H
Template Known Secondary structure								.	S		G	G	G	S		S						S				B		T	T	S		B														T
Template Predicted Secondary structure								.
Template SS confidence
		463	.	.	.	.	.		.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.