Job Description P10378 Confidence 100.00% Date Thu Jan 5 11:32:10 GMT 2012 Rank 28 Aligned Residues 368 % Identity 17% Template c3e53A_ PDB info PDB header:ligase Chain: A: PDB Molecule:fatty-acid-coa ligase fadd28; PDBTitle: crystal structure of n-terminal domain of a fatty acyl amp2 ligase faal28 from mycobacterium tuberculosis Resolution 2.35 Å

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		25	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.										.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure													.	.										.	.	.	.	.	.	.	.	.
Query SS confidence													.	.										.	.	.	.	.	.	.	.	.
Query Sequence		L	P	L	T	D	I	L	T	R	H	A	.	.	A	S	D	S	I	A	V	I	D	.	.	.	.	.	.	.	.	.	G	E	R	Q	L	S	Y	R	E	L	N	Q	A	A	D	N	L	A	C	S	L	R	R	Q	G	I	K	P	G	E	T	A	L	V	Q	L	G	N	V	A	E	L	Y	I	T	F	F	A	L
Query Conservation													.	.										.	.	.	.	.	.	.	.	.
Alig confidence													.	.										.	.	.	.	.	.	.	.	.																										.
Template Conservation																																																										.
Template Sequence		R	S	L	P	A	A	L	R	A	C	A	R	L	Q	P	H	D	P	A	F	T	F	X	D	Y	E	Q	D	W	D	G	V	A	I	T	L	T	W	S	Q	L	Y	R	R	T	L	N	V	A	Q	E	L	S	R	C	G	.	S	T	G	D	R	V	V	I	S	A	P	Q	G	L	E	Y	V	V	A	F	L	G	A
Template Known Secondary structure															S	T	T	S									S	S		S	S																							T	T	S	S	.		T	T									S	S
Template Predicted Secondary structure																																																										.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	L	G	V	A	P	V	L	A	L	F	S	H	Q	R	S	E	L	N	A	Y	A	S	Q	I	E	P	A	L	L	I	A	D	R	Q	H	A	L	F	S	G	D	D	F	L	N	T	F	V	T	E	H	S	S	I	R	V	V	Q	L	L	N	D	S	G	E	H	N	L	Q	D	A	I	N	H	P	A	E	D
Query Conservation
Alig confidence																	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Q	A	G	R	I	A	V	P	L	S	V	P	Q	R	.	.	.	S	D	S	V	L	S	D	S	S	P	V	A	I	L	T	T	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	D	D	V	V	Q	H	V	P	P	S
Template Known Secondary structure				T	T												.	.	.	T	T									S						T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T						T	T
Template Predicted Secondary structure																	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.				.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.																																	.	.	.	.	120	.	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220					.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.
Query SS confidence																																																	.	.	.	.
Query Sequence		F	T	A	T	P	S	P	A	D	E	V	A	Y	F	Q	L	S	G	G	T	T	G	T	P	K	L	I	P	R	T	H	N	D	Y	Y	Y	S	V	R	R	S	V	E	I	C	Q	F	.	.	.	.	T	Q	Q	T	R	Y	L	C	A	I	P	A	A	H	N	Y	A	M	S	S	P	G	S	L	G	V	F	L	A
Query Conservation																																																	.	.	.	.
Alig confidence																																																	.	.	.	.
Template Conservation
Template Sequence		I	I	E	V	D	L	L	D	L	D	A	P	E	Y	P	S	T	A	Y	L	Q	Y	T	P	A	G	V	V	X	S	H	Q	N	V	R	V	N	F	E	Q	L	X	S	G	Y	F	A	D	G	I	P	P	P	N	S	A	L	V	S	W	L	P	F	Y	H	D	X	G	L	V	I	G	I	C	A	P	I	L	G	G
Template Known Secondary structure					G	G	G	S		T	T						S																																					T	T									T	T	S								T							T
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		250	.	.	.	.	.	.	.	.	.			260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.			.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure												.	.																																					.	.																													.	.
Query SS confidence												.	.																																					.	.																													.	.
Query Sequence		G	G	T	V	V	L	A	A	D	P	.	.	S	A	T	L	C	F	P	L	I	E	K	H	Q	V	N	V	T	A	L	V	P	P	A	V	S	L	W	L	Q	A	L	I	E	G	E	S	.	.	R	A	Q	L	A	S	L	K	L	L	Q	V	G	G	A	R	L	S	A	T	L	A	A	R	I	P	A	E	.	.
Query Conservation												.	.																																					.	.																													.	.
Alig confidence												.	.																																					.	.																													.	.
Template Conservation
Template Sequence		Y	P	A	V	L	T	S	P	V	S	F	L	Q	R	P	A	R	W	X	H	L	X	A	S	D	F	H	A	F	S	A	A	P	N	F	A	F	E	L	A	A	R	R	T	T	D	D	D	X	A	G	R	D	L	G	N	I	L	T	I	L	S	G	S	E	R	V	Q	A	A	T	I	K	R	F	A	D	R	F	A
Template Known Secondary structure																T								S	S	S	S																				T	T	T	T	T	T				T	T								S	S	S
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
						324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.																						350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	I	G	C	Q	L	Q	Q	V	F	G	M	A	E	G	L	V	N	Y	T	R	L	D	D	S	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	I	I	H	T	Q	G	Y	P	M	C	P	D	D	E	V	W	V	A	D	A	E	G	N	P	L	P	Q	G
Query Conservation		.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	F	N	L	Q	E	R	V	I	R	P	S	Y	G	L	A	E	A	T	V	Y	V	A	T	S	K	P	G	Q	P	P	E	T	V	D	F	D	T	E	S	L	S	A	G	H	A	K	P	C	A	G	A	T	S	L	I	S	Y	X	L	P	R	S	P	I	V	R	I	V	D	S	D	T	C	I	E	C	P	D	G
Template Known Secondary structure		T	T	T			G	G	G								G	G	G	S	S							T	T	S														T	T	B																	S	S	S							T	T	T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.												.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	V	G	R	L	M	T	R	G	P	Y	T	F	R	G	Y	Y	K	S	P	Q	H	N	A	S	A	F	D	.	.	.	.	.	.	.	.	.	.	.	A	N	G	F	Y	C	S	G	D	L	I	S	I	D	P	E	G	Y	I	T	V	Q	G
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.															.
Template Conservation																																																							.
Template Sequence		T	V	G	E	I	W	V	H	G	D	N	V	A	N	G	Y	W	Q	K	P	D	E	S	E	R	T	F	G	G	K	I	V	T	P	S	P	G	T	P	E	G	P	W	L	R	T	G	D	S	G	F	V	T	.	D	G	K	X	F	I	I	G
Template Known Secondary structure		B								S	T	T	S				B	T	T											B			B	S			T	T						B											.	T	T
Template Predicted Secondary structure																																																							.
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.		.	.	.	.	.	.	.	.