Job Description P10378 Confidence 100.00% Date Thu Jan 5 11:32:10 GMT 2012 Rank 29 Aligned Residues 338 % Identity 16% Template c2y4oA_ PDB info PDB header:ligase Chain: A: PDB Molecule:phenylacetate-coenzyme a ligase; PDBTitle: crystal structure of paak2 in complex with phenylacetyl adenylate Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.
Query SS confidence																																																				.	.
Query Sequence		P	A	E	D	F	T	A	T	P	S	P	A	D	E	V	A	Y	F	Q	L	S	G	G	T	T	G	T	P	K	L	I	P	R	T	H	N	D	Y	Y	Y	S	V	R	R	S	V	E	I	C	Q	.	.	F	T	Q	Q	T	R	Y	L	C	A	I	P	A	A	H	N	Y	A	M	S	S	P	G	S	L	G	V	F
Query Conservation																																																				.	.
Alig confidence																																																				.	.
Template Conservation
Template Sequence		D	N	Y	P	F	G	L	F	A	V	P	R	E	Q	V	V	R	V	H	A	S	S	G	T	T	G	K	P	T	V	V	G	Y	T	A	R	D	I	D	T	W	A	N	V	T	A	R	S	I	R	A	A	G	G	R	P	G	D	T	L	H	N	A	F	G	Y	G	L	F	T	G	G	L	G	I	H	Y	G	A	E
Template Known Secondary structure		T	T	T	T	T	T	T		S	S		G	G	G										S	S	S	S																									T	T			T	T							S			S	S	S
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	G	G	T	V	V	L	A	A	D	P	S	A	T	L	C	F	P	L	I	E	K	H	Q	V	N	V	T	A	L	V	P	P	A	V	S	L	W	L	Q	A	L	I	E	G	E	S	R	A	Q	L	A	S	L	K	L	L	Q	V	G	G	A	R	L	S	A	T	L	A	A	R	I	P	A	E	I	G	C	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	G	C	M	V	V	P	M	S	G	G	Q	T	E	K	Q	V	Q	L	I	R	D	F	E	P	K	I	I	L	V	T	P	S	Y	M	L	N	L	I	D	E	M	V	R	Q	G	M	D	P	A	E	S	S	L	K	I	G	I	F	G	A	E	P	W	T	Q	A	L	R	N	E	V	E	T	R	V	G	I	D
Template Known Secondary structure				T								S																S																			T	T			G	G	G	S	S								S	S															T
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	Q	V	F	G	M	A	E	G	L	V	N	Y	T	R	L	D	D	S	A	E	K	I	I	H	T	Q	G	Y	P	M	C	P	D	D	E	V	W	V	A	D	A	E	G	N	P	L	P	Q	G	E	V	G	R	L	M	T	R	G	P	Y	T	F	R	G	Y	Y	K	S	P	Q	H	N	A	S	A	F	D	A
Query Conservation
Alig confidence																			.	.																																																				.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.																																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	D	I	Y	G	L	S	E	V	M	G	P	G	V	A	C	.	.	E	C	V	E	T	K	D	G	P	V	I	W	E	D	H	F	Y	P	E	I	I	D	P	V	T	G	E	V	L	P	D	G	S	Q	G	E	L	V	F	T	S	L	T	K	E	A	M	P	V	I	R	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									T	T	T	T							.	.			T	T	T			S					T	T	T								T	T	T			B			T	T										S	S		S	S	S			S	S	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.																																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.			.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.							.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure																		.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.
Query Sequence		N	G	F	Y	C	S	G	D	L	I	S	I	D	P	E	G	.	.	.	.	.	.	Y	I	T	V	Q	G	R	E	K	D	Q	I	N	R	G	G	E	K	I	A	A	E	E	I	E	N	L	L	L	R	H	P	A	V	I	Y	A	A	L	V	S	M	E	D	E	L	M	G	E	K	S	C	A	Y	L	V	V	K
Query Conservation																		.	.	.	.	.	.
Alig confidence		.	.	.														.	.	.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	Y	R	T	R	D	L	T	A	L	L	P	P	T	A	R	A	M	R	R	L	A	K	I	T	G	R	S	D	D	M	L	I	V	R	G	V	N	V	F	P	S	Q	I	E	E	I	V	V	A	L	P	L	L	S	G	Q	F	Q	I	T	L	S	R	D	G	H	M	D	R	L	D	L	A	V	E	L	R
Template Known Secondary structure		.	.	.													S	S	S	S	S										S	S						T	T														T	S	T	T													T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		482	.								.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.				.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.																			.	.	.
Query SS confidence				.	.	.	.	.	.	.																			.	.	.
Query Sequence		E	P	.	.	.	.	.	.	.	L	R	A	V	Q	V	R	R	F	L	R	E	Q	G	I	A	E	F	.	.	.	K	L	P	D	R	V	E	C	V	D	S	L	P	L	T	A	V	G	K	V	D	K
Query Conservation				.	.	.	.	.	.	.																			.	.	.
Alig confidence				.	.	.	.	.	.	.														.					.	.	.
Template Conservation																								.
Template Sequence		S	E	A	A	A	S	V	T	D	G	E	R	A	A	L	A	R	E	L	Q	H	R	.	I	K	T	M	V	G	V	S	S	G	V	T	V	L	A	A	G	G	I	P	A	T	A	T	G	K	A	R	R
Template Known Secondary structure						T	T																	.					T											T	T		S				T	T	S				S
Template Predicted Secondary structure																								.
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.		.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions