Job Description P10378 Confidence 100.00% Date Thu Jan 5 11:32:10 GMT 2012 Rank 11 Aligned Residues 488 % Identity 19% Template c1amuB_ PDB info PDB header:peptide synthetase Chain: B: PDB Molecule:gramicidin synthetase 1; PDBTitle: phenylalanine activating domain of gramicidin synthetase 12 in a complex with amp and phenylalanine Resolution 1.90 Å

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		10	.	.	.	.	.	.	.	.	.			20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure												.	.																	.	.
Query SS confidence												.	.																	.	.
Query Sequence		E	E	F	A	R	R	Y	R	E	K	.	.	G	Y	W	Q	D	L	P	L	T	D	I	L	T	R	H	A	.	.	A	S	D	S	I	A	V	I	D	G	E	R	Q	L	S	Y	R	E	L	N	Q	A	A	D	N	L	A	C	S	L	R	R	Q	G	I	K	P	G	E	T	A	L	V	Q	L	G	N	V	A	E
Query Conservation												.	.																	.	.
Alig confidence												.	.																	.	.
Template Conservation
Template Sequence		E	Q	Y	L	F	A	V	N	N	T	K	A	E	Y	P	R	D	K	T	I	H	Q	L	F	E	E	Q	V	S	K	R	P	N	N	V	A	I	V	C	E	N	E	Q	L	T	Y	H	E	L	N	V	K	A	N	Q	L	A	R	I	F	I	E	K	G	I	G	K	D	T	L	V	G	I	M	M	E	K	S	I	D
Template Known Secondary structure								T	T								T	T															T	T	S						T	T																							T			T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	I	T	F	F	A	L	L	K	L	G	V	A	P	V	L	A	L	F	S	H	Q	R	S	E	L	N	A	Y	A	S	Q	I	E	P	A	L	L	I	A	D	R	Q	H	A	L	F	S	G	D	D	F	L	N	T	F	V	T	E	H	S	S	I	R	V	V	Q	L	L	N	D	S	G	E	H	N	L	Q	D
Query Conservation
Alig confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	F	I	G	I	L	A	V	L	K	A	G	G	A	Y	V	P	I	D	I	E	Y	P	K	E	R	I	Q	Y	I	L	D	D	S	Q	A	R	M	L	L	T	Q	K	H	L	V	H	L	I	H	N	Q	F	N	G	Q	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure												T	T								T	T	S															S						G	G	G	G	G	G	G						S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	N	H	P	A	E	D	F	T	A	T	P	S	P	A	D	E	V	A	Y	F	Q	L	S	G	G	T	T	G	T	P	K	L	I	P	R	T	H	N	D	Y	Y	Y	S	V	R	R	S	V	E	I	C	Q	F	T	Q	Q	T	R	Y	L	C	A	I	P	A	A	H	N	Y	A	M	S	S	P	G	S	L	G
Query Conservation
Alig confidence																																																																												.	.
Template Conservation																																																																												.	.
Template Sequence		I	F	E	E	D	T	I	K	I	R	E	G	T	N	L	H	V	P	S	K	S	T	D	L	A	Y	V	I	Y	T	N	P	K	G	T	M	L	E	H	K	G	I	S	N	L	K	V	F	F	E	N	S	L	N	V	T	E	K	D	R	I	G	Q	F	A	S	I	S	F	D	A	S	V	W	.	.	E	M	F	M
Template Known Secondary structure						S	S	G	G	G	S			S								T	T	S																													T	S				T	T							S		T	T	S	T					.	.
Template Predicted Secondary structure																																																																												.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	L	A	G	G	T	V	V	L	A	A	D	P	S	A	T	L	C	F	P	L	I	E	K	H	Q	V	N	V	T	A	L	V	P	P	A	V	S	L	W	L	Q	A	L	I	E	G	E	S	R	A	Q	L	A	S	L	K	L	L	Q	V	G	G	A	R	L	S	A	T	L	A	A	R	I	P	A	E	I	G
Query Conservation
Alig confidence																																																		.	.	.	.	.
Template Conservation																																																		.	.	.	.	.
Template Sequence		A	L	L	T	G	A	S	L	Y	I	I	L	K	D	T	I	N	D	F	V	K	F	E	Q	Y	I	N	Q	K	E	I	T	V	I	T	L	P	P	T	Y	V	V	H	L	D	P	E	R	.	.	.	.	.	I	L	S	I	Q	T	L	I	T	A	G	S	A	T	S	P	S	L	V	N	K	W	K	E	K	V	T
Template Known Secondary structure				T	T	T												T												T	T												T	T	S		T	T	T	.	.	.	.	.			S		S						S	S											T	T	T	S
Template Predicted Secondary structure																																																		.	.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.						.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	Q	L	Q	Q	V	F	G	M	A	E	G	L	V	N	Y	T	R	L	D	D	S	A	E	K	I	I	H	T	Q	G	Y	P	M	C	P	D	D	E	V	W	V	A	D	A	E	G	N	P	L	P	Q	G	E	V	G	R	L	M	T	R	G	P	Y	T	F	R	G	Y	Y	K	S	P	Q	H	N	A	S	A	F
Query Conservation
Alig confidence																																			.
Template Conservation																																			.
Template Sequence		Y	I	N	A	Y	G	P	T	E	T	T	I	C	A	T	T	W	V	A	T	K	E	T	I	G	H	S	V	P	I	G	A	P	.	I	Q	N	T	Q	I	Y	I	V	D	E	N	L	Q	L	K	S	V	G	E	A	G	E	L	C	I	G	G	E	G	L	A	R	G	Y	W	K	R	P	E	L	T	S	Q	K	F
Template Known Secondary structure									G	G	G	S	S		S							S	S				S	S				B			.		T	T								T	T	S		B			T	T										T	T						T	T
Template Predicted Secondary structure																																			.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
		406	.	.							.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.
Query Sequence		D	A	N	.	.	.	.	.	.	G	F	Y	C	S	G	D	L	I	S	I	D	P	E	G	Y	I	T	V	Q	G	R	E	K	D	Q	I	N	R	G	G	E	K	I	A	A	E	E	I	E	N	L	L	L	R	H	P	A	V	I	Y	A	A	L	V	S	M	E	D	E	L	M	G	E	K	S	C	A	Y	L	V
Query Conservation					.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.
Template Conservation
Template Sequence		V	D	N	P	F	V	P	G	E	K	L	Y	K	T	G	D	Q	A	R	W	L	S	D	G	N	I	E	Y	L	G	R	I	D	N	Q	V	K	I	R	G	H	R	V	E	L	E	E	V	E	S	I	L	L	K	H	M	Y	I	S	E	T	A	V	S	V	H	K	D	H	Q	E	Q	P	Y	L	C	A	Y	F	V
Template Known Secondary structure					S	S	S	T	T	S													T	T	S								G	G	G					T	T														T	S	T	T												T	T	S
Template Predicted Secondary structure
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	E	P	L	R	A	V	Q	V	R	R	F	L	R	E	Q	G	I	A	E	F	K	L	P	D	R	V	E	C	V	D	S	L	P	L	T	A	V	G	K	V	D	K	K	Q	L	R	Q
Query Conservation
Alig confidence																			.
Template Conservation																			.
Template Sequence		S	E	K	H	I	P	L	E	Q	L	R	Q	F	S	S	E	E	.	L	P	T	Y	M	I	P	S	Y	F	I	Q	L	D	K	M	P	L	T	S	N	G	K	I	D	R	K	Q	L	P	E
Template Known Secondary structure			S	S															.	S		G	G	G	S		S						S	S			B		T	T	S	S	B		G	G	G	S
Template Predicted Secondary structure																			.
Template SS confidence
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.		.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.