Job Description P69931 Confidence 99.78% Date Thu Jan 5 12:12:24 GMT 2012 Rank 43 Aligned Residues 193 % Identity 15% Template c3u5zM_ PDB info PDB header:dna binding protein/dna Chain: M: PDB Molecule:dna polymerase accessory protein 44; PDBTitle: structure of t4 bacteriophage clamp loader bound to the t4 clamp,2 primer-template dna, and atp analog Resolution 3.50 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		Q	L	S	L	P	L	Y	L	P	D	D	E	T	F	A	S	F	W	P	G	D	N	S	S	L	L	A	A	L	Q	N	V	L	R	Q	E	H	S	G	Y	.	I	Y	L	W	A	R	E	G	A	G	R	S	H	L	L	H	A	A	C	A	E	L	S	Q	R	G	D	A	V	G	Y	V	P	L	D	K	R	T	W
Query Conservation																																										.
Alig confidence													.								.	.																				.
Template Conservation													.								.	.
Template Sequence		E	H	I	L	E	Q	K	Y	R	P	S	.	T	I	D	E	C	I	L	.	.	P	A	F	D	K	E	T	F	K	S	I	T	S	K	G	K	I	P	H	I	I	L	H	S	P	S	P	G	T	G	K	T	T	V	A	K	A	L	C	H	D	V	N	A	D	M	M	F	V	N	G	S	D	C	K	I	D	F	V
Template Known Secondary structure				S	S	T	T	T	S			S	.	S	T	T	T	S			.	.															S	S									S	S	S		S	S												T	T								G	G	G
Template Predicted Secondary structure													.								.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.		.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.						.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.
Query SS confidence															.	.	.	.	.
Query Sequence		F	V	P	E	V	L	D	G	M	E	H	L	S	.	.	.	.	.	L	V	C	I	D	N	I	E	C	I	A	G	D	E	L	W	E	M	A	I	F	D	L	Y	N	R	I	L	E	S	G	K	T	R	L	L	I	T	G	D	R	P	P	R	Q	L	N	L	G	L	P	D	L	A	S	R	L	D	W	G	Q	I
Query Conservation															.	.	.	.	.
Alig confidence															.	.	.	.	.													.															.	.																					.	.	.	.	.	.	.
Template Conservation																																.															.	.																					.	.	.	.	.	.	.
Template Sequence		R	G	P	L	T	N	F	A	S	A	A	S	F	D	G	R	Q	K	V	I	V	I	D	E	F	D	R	S	G	L	.	A	E	S	Q	R	H	L	R	S	F	M	E	A	Y	.	.	S	S	N	C	S	I	I	I	T	A	N	N	I	D	G	I	I	K	P	L	.	.	.	.	.	.	.	Q	S	R	C	R	V
Template Known Secondary structure			T								S			T	T										S				G	G	G	.														T	.	.	T	T	T								S		G	G	G	S					.	.	.	.	.	.	.				S
Template Predicted Secondary structure																																.															.	.																					.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.								.	150	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.									.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.
Query Sequence		Y	K	L	Q	P	L	S	D	E	D	K	L	Q	A	L	Q	L	R	A	R	L	R	G	F	E	.	.	.	.	.	.	.	.	L	P	E	D	V	G	R	F	L	L	K	R	L	D	R	E	M	R	T	L	F	M	T	L	D	Q	L
Query Conservation																											.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	T	F	G	Q	P	T	D	E	D	K	I	E	M	M	K	Q	M	I	R	R	L	T	E	I	C	K	H	E	G	I	A	I	A	D	M	K	V	V	A	A	L	V	K	K	N	F	P	D	F	R	K	T	I	G	E	L	D	S	Y
Template Known Secondary structure				T	T																										T				S		S										T		S												T
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions