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Job DescriptionP69931
Confidence95.99%DateThu Jan 5 12:12:24 GMT 2012
Rank472Aligned Residues80
% Identity18%Templatec3tmiA_
PDB info PDB header:hydrolase/rnaChain: A: PDB Molecule:atp-dependent rna helicase ddx58; PDBTitle: structural basis for rna recognition and activation of rig-i
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   42.......50.........60....... ..70.........80.........90.....
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Query Sequence  HSGYIYLWAREGAGRSHLLHAACAEL. . . . . . SQRGDAVGYVPLDKRTWFVPEVLDGMEH. . . . . . . . . . . . . . . . . . . .
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Template Sequence  KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVE
Template Known Secondary structure  TT



TTS
TS
TT




SSTTTT


TTT
SSS
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   256...260.........270.........280.........290.........300.........310.........320.........330.....
 
   96...100.........110.........120.
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LSLVCIDNIECIAGDELWEMAIFDLY
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Template Sequence  QIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYL
Template Known Secondary structure  T
S
TTSS

GGG
STGGGSSSSS
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   336...340.........350.........360.........370.........380.........390.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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