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Job DescriptionP69931
Confidence99.42%DateThu Jan 5 12:12:24 GMT 2012
Rank84Aligned Residues216
% Identity17%Templatec3k1jA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:atp-dependent protease lon; PDBTitle: crystal structure of lon protease from thermococcus onnurineus na1
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  PLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDK. . . . . . . .
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Template Sequence  EIEVPEK. LIDQ. VIGQ. EHAVEVIKTAANQKR. . HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRI
Template Known Secondary structure  GS


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   32...... .40.. .... ...50.........60. ........70.........80.........90.........100......
 
   82.......90.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RTWFVPEVLDGMEH
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Template Sequence  KTVPACQGRRIVEKYREKAKSQESVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFLGTPAHERVEPGMIHRAH
Template Known Secondary structure  TTT






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GGGG

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   107..110.........120.........130.........140.........150.........160.........170.........180......
 
   96...100.........110.........120... ......130.........140.........150....
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Query Sequence  LSLVCIDNIECIAGDELWEMAIFDLYNR. . . . . . . . . . . . . . . . . . . . . ILESGKTRLLITGDRPPRQLNLGLPDLASRL
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Template Sequence  KGVLFIDEIATL. . SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALRSRIRGYG
Template Known Secondary structure  TSTTGGGS..
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B
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TTSGGGG
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   239240.........250 .........260.........270.........280.........290.........300.........310......
 
   155....160.........170.........180. ........190......... 200.........210.........
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Query Sequence  DWGQIYKLQPLSDEDKLQALQLRARLR. . . . . GFELPEDVGRFLLKRLDR. . . . . . . . . . EMRTLFMTLDQLDRASITAQ
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Template Sequence  YEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKG
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   317..320.........330.........340.........350.........360.........370.........380.........390......
 
   220. ........230..
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Query Sequence  RK. LTIPFVKEILK
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Template Sequence  KKYVEREDVIEAVK
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   397..400.........410
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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