Job Description P69931 Confidence 99.65% Date Thu Jan 5 12:12:24 GMT 2012 Rank 59 Aligned Residues 197 % Identity 12% Template c3dzdA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state Resolution 2.40 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																			.																																																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.																																																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	P	G	D	N	S	S	L	L	A	A	L	Q	N	V	L	R	.	Q	E	H	S	G	Y	I	Y	L	W	A	R	E	G	A	G	R	S	H	L	L	H	A	A	C	A	E	L	S	Q	R	G	D	A	V	G	Y	V	P	L	D	K	R	T	W	F	V	P	E	V	L	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																			.																																																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.																																																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	V	G	E	H	P	K	I	L	E	I	K	R	L	I	P	K	I	A	K	S	K	A	P	V	L	I	T	G	E	S	G	T	G	K	E	I	V	A	R	L	I	H	R	Y	S	G	R	K	G	A	F	V	D	L	N	C	A	S	I	P	Q	E	L	A	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A
Template Known Secondary structure						S															T	S		S								T	T	S	S																S							S	S	S	S		T	T	T										S		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
									91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.										.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	D	G	M	E	H	L	S	L	V	C	I	D	N	I	E	C	I	A	G	D	E	L	W	E	M	A	I	F	D	L	Y	N	R	.	.	.	.	.	.	.	.	.	I	L	E	S	G	K	T	R	L	L	I	T	G	D	R	P	P	R	Q	L	N	L	G	L	P	D	L	A	S	R	L
Query Conservation		.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																			.	.														.	.	.	.	.	.	.	.	.
Template Conservation																											.	.
Template Sequence		L	T	R	K	K	G	K	L	E	L	A	D	Q	G	T	L	F	L	D	E	V	G	E	L	D	.	.	Q	R	V	Q	A	K	L	L	R	V	L	E	T	G	S	F	T	R	L	G	G	N	Q	K	I	E	V	D	I	R	V	I	S	A	T	N	K	N	L	E	E	E	I	K	K	G	N	F	R	E	D	L	Y
Template Known Secondary structure												T	T	T	S						T	G	G	G	S		.	.														S					B	T																S	S								T	T	S	S
Template Predicted Secondary structure																											.	.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170									.	.	.	.	.	.	.	.	.	180	.	.	.				.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.														.	.	.														.
Query SS confidence																		.	.	.	.	.	.	.	.														.	.	.														.
Query Sequence		D	W	G	Q	I	Y	K	L	Q	P	L	S	D	E	D	K	.	.	.	.	.	.	.	.	L	Q	A	L	Q	L	R	A	R	L	R	G	F	.	.	.	E	L	P	E	D	V	G	R	F	L	L	K	R	.	L	D	R	E	M	R	T	L	F	M	T	L	D	Q	L	D	R	A	S	I	T	A	Q	R	K	L
Query Conservation																		.	.	.	.	.	.	.	.														.	.	.														.
Alig confidence																		.	.	.	.	.	.	.	.														.	.	.														.															.	.
Template Conservation																																																																						.	.
Template Sequence		Y	R	L	S	V	F	Q	I	Y	L	P	P	L	R	E	R	G	K	D	V	I	L	L	A	E	Y	F	L	K	K	F	A	K	E	Y	K	K	N	C	F	E	L	S	E	E	T	K	E	Y	L	X	K	Q	E	W	K	G	N	V	R	E	L	K	N	L	I	E	R	.	.	A	V	I	L	C	E	G	E	V	I
Template Known Secondary structure					T	S								G	G	G	S	T	T																	T	T						B										T				T	T												.	.				T			S	S	B
Template Predicted Secondary structure																																																																						.	.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.			.	.	360	.	.	.	.	.	.	.
		223
Predicted Secondary structure
Query SS confidence
Query Sequence		T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		368

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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