Job Description P69931 Confidence 99.82% Date Thu Jan 5 12:12:24 GMT 2012 Rank 33 Aligned Residues 223 % Identity 15% Template c3cf1C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx Resolution 4.40 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.														40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	P	A	Q	L	S	L	P	L	Y	L	P	D	D	E	T	F	A	S	F	W	P	G	D	N	S	S	L	L	A	A	L	Q	N	V	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	E	H	S	G	Y	I	Y	L	W	A	R	E	G	A	G	R	S	H	L	L	H	A	A	C	A	E	L	S	Q
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.
Template Sequence		N	P	S	A	L	R	E	T	V	V	E	V	P	Q	V	T	W	E	D	.	.	I	G	G	L	E	D	V	K	R	E	L	Q	E	L	V	Q	Y	P	V	E	H	P	D	K	F	L	K	F	G	M	T	P	S	K	G	V	L	F	Y	G	P	P	G	C	G	K	T	L	L	A	K	A	I	A	N	E	C	Q	A
Template Known Secondary structure					S			S										T	T	T	.	.	T		S																								T	S						S								T	T	S													T	T
Template Predicted Secondary structure																					.	.
Template SS confidence
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.			.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.
		70	.	.	.	.						.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.													.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure							.	.	.	.	.																					.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.																					.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	G	D	A	V	.	.	.	.	.	G	Y	V	P	L	D	K	R	T	W	F	V	P	E	V	L	D	G	M	E	.	.	H	L	S	L	V	C	I	D	N	I	E	C	I	A	G	D	E	L	.	.	.	.	.	.	.	.	.	.	.	.	W	E	M	A	I	F	D	L	Y	N	R	I	L	E	S	G	K	T
Query Conservation							.	.	.	.	.																					.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.																					.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	F	I	S	I	K	G	P	E	L	L	T	M	W	F	G	E	S	E	A	N	V	R	E	I	F	D	K	A	R	Q	A	A	P	C	V	L	F	F	D	E	L	D	S	I	A	K	A	R	G	G	N	I	G	D	G	G	G	A	A	D	R	V	I	N	Q	I	L	T	E	M	D	G	M	S	T	K	K	N	V
Template Known Secondary structure																T	T	T		T							T	T	T	T	T	T	T		S						S	S	G	G	G	G					T	T	T	T		S	S			S														S	S		T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		538	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		R	L	L	I	T	G	D	R	P	P	R	Q	L	N	L	G	L	P	D	L	A	S	R	L	D	W	G	Q	I	Y	K	L	Q	P	L	S	D	E	D	K	L	Q	A	L	Q	L	R	A	R	L	R	G	F	E	L	P	E	D	V	G	R	F	L	L	K	R	L	D	R	.	E	M	R	T	L	F	M	T	L	D
Query Conservation																																																																							.
Alig confidence											.	.	.	.																																														.											.
Template Conservation											.	.	.	.																																														.
Template Sequence		F	I	I	G	A	T	N	R	P	.	.	.	.	D	I	I	D	P	A	I	L	R	P	G	R	L	D	Q	L	I	Y	I	P	L	P	D	E	K	S	R	V	A	I	L	K	A	N	L	R	K	S	P	V	A	K	D	V	D	.	L	E	F	L	A	K	M	T	N	G	F	S	G	A	D	L	T	E	I	C	Q
Template Known Secondary structure								S		G	.	.	.	.	G	G			G	G	G	T	S	T	T	T	S											T	T										T	T	T	S		B		S	S			.					T	T	T		S	S
Template Predicted Secondary structure											.	.	.	.																																														.
Template SS confidence
		618	.	620	.	.	.	.	.	.					.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.		.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.
		210	.	.	.	.	.	.	.	.	.							220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure												.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.
Query Sequence		Q	L	D	R	A	S	I	T	A	Q	.	.	.	.	.	.	R	K	L	T	I	P	F	V	K	E	I	L	K
Query Conservation												.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.
Template Conservation
Template Sequence		R	A	C	K	L	A	I	R	E	S	I	E	S	E	I	V	P	E	I	R	R	D	H	F	E	E	A	M	R
Template Known Secondary structure					T	T														B										T
Template Predicted Secondary structure
Template SS confidence
		693	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions