Job Description P69931 Confidence 99.97% Date Thu Jan 5 12:12:24 GMT 2012 Rank 2 Aligned Residues 220 % Identity 23% Template c2z4rB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: crystal structure of domain iii from the thermotoga2 maritima replication initiation protein dnaa Resolution 3.05 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70			.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																		.	.																												.	.												.	.	.	.	.	.
Query SS confidence																																		.	.																												.	.												.	.	.	.	.	.
Query Sequence		Y	L	P	D	D	E	T	F	A	S	F	W	P	G	D	N	S	S	L	L	A	A	L	Q	N	V	L	R	Q	E	H	S	.	.	G	Y	I	Y	L	W	A	R	E	G	A	G	R	S	H	L	L	H	A	A	C	A	E	L	S	Q	R	.	.	G	D	A	V	G	Y	V	P	L	D	K	.	.	.	.	.	.
Query Conservation																																		.	.																												.	.												.	.	.	.	.	.
Alig confidence																																		.	.																												.	.												.	.	.	.	.	.
Template Conservation
Template Sequence		P	L	N	P	D	Y	T	F	E	N	F	V	V	G	P	G	N	S	F	A	Y	H	A	A	L	E	V	A	K	H	P	G	R	Y	N	P	L	F	I	Y	G	G	V	G	L	G	K	T	H	L	L	Q	S	I	G	N	Y	V	V	Q	N	E	P	D	L	R	V	M	Y	I	T	S	E	K	F	L	N	D	L	V
Template Known Secondary structure					S	S		S	G	G	G					T	T	T													S	T	T	T	S								S	S	S	S	S																S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
						82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	R	T	W	F	V	P	E	V	L	D	G	M	E	H	L	S	L	V	C	I	D	N	I	E	C	I	A	G	D	E	L	W	E	M	A	I	F	D	L	Y	N	R	I	L	E	S	G	K	T	R	L	L	I	T	G	D	R	P	P	R	Q	L	N	L	G	L	P	D	L	A	S	R	L	D	W	G
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																																																	.
Template Conservation																																																						.
Template Sequence		D	S	M	K	E	G	K	L	N	E	F	R	E	K	Y	R	K	K	V	D	I	L	L	I	D	D	V	Q	F	L	I	G	K	T	G	V	Q	T	E	L	F	H	T	F	N	E	L	H	D	S	G	K	.	Q	I	V	I	C	S	D	R	E	P	Q	K	L	S	E	F	Q	D	R	L	V	S	R	F	Q	M	G
Template Known Secondary structure						T	S										T	T	T		S							G	G	G	G	T	T																	T	T	T		.							S	S		T	T	T		S	S											S	S
Template Predicted Secondary structure																																																						.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.		.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	Y	K	L	Q	P	L	S	D	E	D	K	L	Q	A	L	Q	L	R	A	R	L	R	G	F	E	L	P	E	D	V	G	R	F	L	L	K	R	L	D	R	E	M	R	T	L	F	M	T	L	D	Q	L	D	R	A	S	I	T	A	Q	R	K	L	T	I	P	F	V	K	E	I	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	A	K	L	E	P	P	D	E	E	T	R	K	S	I	A	R	K	M	L	E	I	E	H	G	E	L	P	E	E	V	L	N	F	V	A	E	N	V	D	D	N	L	R	R	L	R	G	A	I	I	K	L	L	V	Y	K	E	T	T	G	K	E	V	D	L	K	E	A	I	L	L	L	K
Template Known Secondary structure																										T					T	T											S																			S	S	S											T	G
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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