Job Description P69931 Confidence 97.48% Date Thu Jan 5 12:12:24 GMT 2012 Rank 234 Aligned Residues 94 % Identity 16% Template c2gk7A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: structural and functional insights into the human upf1 helicase core Resolution 2.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence		N	T	P	A	Q	L	S	L	P	L	Y	L	P	D	D	E	T	F	A	S	F	W	P	G	D	N	S	S	L	L	A	A	L	Q	N	V	L	R	Q	E	H	S	G	Y	I	Y	L	W	A	R	E	G	A	G	R	S	.	H	L	L	H	A	A	C	A	E	L	S	Q	R	G	D	A	V	G	Y	V	P	L	D
Query Conservation																																																										.
Alig confidence																						.																	.	.	.																	.
Template Conservation																						.																	.	.	.
Template Sequence		H	E	V	E	D	V	I	I	K	C	Q	L	P	K	R	F	T	A	Q	G	.	L	P	D	L	N	H	S	Q	V	Y	A	V	K	T	V	L	.	.	.	Q	R	P	L	S	L	I	Q	G	P	P	G	T	G	K	T	V	T	S	A	T	I	V	Y	H	L	A	R	Q	G	N	G	P	V	L	V	C	A	P	S
Template Known Secondary structure															S			S		T	T	.	S															T	.	.	.	T	S	S								T	T	S																T		S	S							S	S
Template Predicted Secondary structure																						.																	.	.	.
Template SS confidence
		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.		.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.				.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	T	W	F	V	P	E	V	L	D	G	M	E	H	L	S	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	I	A	V	D	Q	L	T	E	K	I	H	Q	T	G	L	K	V	V
Template Known Secondary structure														T	T	T
Template Predicted Secondary structure
Template SS confidence
		524	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions