Job Description P69931 Confidence 99.73% Date Thu Jan 5 12:12:24 GMT 2012 Rank 51 Aligned Residues 201 % Identity 12% Template c2c99A_ PDB info PDB header:transcription regulation Chain: A: PDB Molecule:psp operon transcriptional activator; PDBTitle: structural basis of the nucleotide driven conformational2 changes in the aaa domain of transcription activator pspf Resolution 1.9 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.																																																			.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.																																																			.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	P	G	D	N	S	S	L	L	A	A	L	Q	N	V	L	R	.	Q	E	H	S	G	Y	I	Y	L	W	A	R	E	G	A	G	R	S	H	L	L	H	A	A	C	A	E	L	S	Q	R	G	D	A	V	G	Y	V	P	L	D	K	R	T	W	F	V	P	E	V	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																			.																																																			.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.																																																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	G	E	A	N	S	F	L	E	V	L	E	Q	V	S	H	L	A	P	L	D	K	P	V	L	I	I	G	E	R	G	T	G	K	E	L	I	A	S	R	L	H	Y	L	S	S	R	W	Q	G	P	F	I	S	L	N	C	A	A	L	N	E	N	L	L	D	S	E	L	F	G	H	E	A	K	R	H	P	G
Template Known Secondary structure																				T	T	S		S								T	T	S	S											T	S	T	T	T	T	S							G	G	G	S												B					B
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.										.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.
Query Sequence		L	D	G	M	E	H	L	S	L	V	C	I	D	N	I	E	C	I	A	G	D	E	L	W	E	M	A	I	F	D	L	Y	N	R	I	L	E	.	.	.	.	.	.	.	.	.	S	G	K	T	R	L	L	I	T	G	D	R	P	P	R	Q	L	N	L	G	L	P	D	L	A	S	R	L	D	W	G	Q	I	Y
Query Conservation																																							.	.	.	.	.	.	.	.	.
Alig confidence																					.	.																	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.
Template Sequence		R	F	E	R	A	D	G	G	T	L	F	L	D	E	L	A	T	A	P	.	.	M	M	V	Q	E	K	L	L	R	V	I	E	Y	G	E	L	E	R	V	G	G	S	Q	P	L	Q	V	N	V	R	L	V	C	A	T	N	A	D	L	P	A	M	V	N	E	G	T	F	R	A	D	L	L	D	R	L	A	F	D
Template Known Secondary structure						T	T	T	S						S	G	G	G	S		.	.														S						S	S	S														S	S									T	S	S										S
Template Predicted Secondary structure																					.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180													.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.																	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.																	.
Query Sequence		K	L	Q	P	L	S	D	E	D	K	L	Q	A	L	Q	L	R	A	R	L	.	.	.	.	.	.	.	.	.	.	.	.	R	G	F	E	L	P	E	D	V	G	R	F	L	L	K	R	.	L	D	R	E	M	R	T	L	F	M	T	L	D	Q	L	D	R	A	S	I	T	A	Q	R	K	L	T	I	P	F	V
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.																	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.																	.															.	.
Template Conservation																																																																	.	.
Template Sequence		V	V	Q	L	P	P	L	R	E	R	E	S	D	I	M	L	M	A	E	Y	F	A	I	Q	M	C	R	E	I	K	L	P	L	F	P	G	F	T	E	R	A	R	E	T	L	L	N	Y	R	W	P	G	N	I	R	E	L	K	N	V	V	E	R	.	.	S	V	Y	R	H	G	T	S	D	Y	P	L	D	D	I
Template Known Secondary structure								G	G	G	S																			T	T		S	S				B											S			T	T												.	.								S	S	S		B
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.	.	.	.	.	250

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions