Job Description P69931 Confidence 99.84% Date Thu Jan 5 12:12:24 GMT 2012 Rank 25 Aligned Residues 207 % Identity 16% Template c1xxhB_ PDB info PDB header:transferase Chain: B: PDB Molecule:dna polymerase iii subunit gamma; PDBTitle: atpgs bound e. coli clamp loader complex Resolution 3.45 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	P	L	Y	L	P	D	D	E	T	F	A	S	F	W	P	G	D	N	S	S	L	L	A	A	L	Q	N	V	L	R	Q	E	H	S	G	Y	.	I	Y	L	W	A	R	E	G	A	G	R	S	H	L	L	H	A	A	C	A	E	L	S	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																							.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.								.	.																				.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.								.	.
Template Sequence		L	A	R	K	W	R	P	Q	.	T	F	A	D	V	V	G	.	.	Q	E	H	V	L	T	A	L	A	N	G	L	S	L	G	R	I	H	H	A	Y	L	F	S	G	T	R	G	V	G	K	T	S	I	A	R	L	L	A	K	G	L	N	C	E	T	G	I	T	A	T	P	C	G	V	C	D	N	C	R	E	I
Template Known Secondary structure						T			S	.	S	G	G	G			S	.	.														T	T				S							S	T	T	S	S													S		T	T		S		S	S			S		S
Template Predicted Secondary structure										.								.	.
Template SS confidence
		6	.	.	.	10	.	.	.		.	.	.	.	.	.	20			.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
							70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.							.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																									.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																									.	.	.	.	.	.
Query Sequence		.	.	.	.	.	R	G	D	A	V	G	Y	V	P	L	D	K	R	T	W	F	V	P	E	V	L	D	G	M	.	.	.	.	.	.	E	H	L	S	L	V	C	I	D	N	I	E	C	I	A	G	D	E	L	W	E	M	A	I	F	D	L	Y	N	R	I	L	E	S	G	K	T	R	L	L	I	T	G	D	R
Query Conservation		.	.	.	.	.																									.	.	.	.	.	.
Alig confidence		.	.	.	.	.																									.	.	.	.	.	.																.	.															.	.
Template Conservation																																																				.	.															.	.
Template Sequence		E	Q	G	R	F	V	D	L	I	E	I	D	A	A	S	R	T	K	V	E	D	T	R	D	L	L	D	N	V	Q	Y	A	P	A	R	G	R	F	K	V	Y	L	I	D	E	V	H	M	L	S	.	.	R	H	S	F	N	A	L	L	K	T	L	E	E	P	.	.	P	E	H	V	K	F	L	L	A	T	T	D
Template Known Secondary structure				T			T	T						S	S		S	T	T	T	T								T				S		S	S	S	S								T	G	G	G			.	.													S		.	.		T	T								S
Template Predicted Secondary structure																																																				.	.															.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	P	R	Q	L	N	L	G	L	P	D	L	A	S	R	L	D	W	G	Q	I	Y	K	L	Q	P	L	S	D	E	D	K	L	Q	A	L	Q	L	R	A	R	L	R	G	F	E	L	P	E	D	V	G	R	F	L	L	K	R	L	D	R	E	M	R	T	L	F	M	T	L	D	Q	L	D	R	A	S	I	T	A
Query Conservation
Alig confidence										.	.	.	.	.	.	.																																																		.	.	.
Template Conservation										.	.	.	.	.	.	.																																																		.	.	.
Template Sequence		P	Q	K	L	P	V	T	I	.	.	.	.	.	.	.	L	S	R	C	L	Q	F	H	L	K	A	L	D	V	E	Q	I	R	H	Q	L	E	H	I	L	N	E	E	H	I	A	H	E	P	R	A	L	Q	L	L	A	R	A	A	E	G	S	L	R	.	.	.	D	A	L	S	L	T	D	Q	A	I	A	S	G
Template Known Secondary structure		T	T	S	S					.	.	.	.	.	.	.			T	S																							T	T	T			B												S		S				.	.	.
Template Predicted Secondary structure										.	.	.	.	.	.	.																																																		.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.								.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.				.	.	.	.	220	.	.	.	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	K	L	T	I	P	F	V	K	E	I	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	G	Q	V	S	T	Q	A	V	S	A	M	L	G
Template Known Secondary structure		T	T		B									S
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions