Job Description P69931 Confidence 99.76% Date Thu Jan 5 12:12:24 GMT 2012 Rank 45 Aligned Residues 188 % Identity 14% Template c1sxjE_ PDB info PDB header:replication Chain: E: PDB Molecule:activator 1 40 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																				.																																						.	.	.	.	.	.	.	.
Query SS confidence																																				.																																						.	.	.	.	.	.	.	.
Query Sequence		Y	L	P	D	D	E	T	F	A	S	F	W	P	G	D	N	S	S	L	L	A	A	L	Q	N	V	L	R	Q	E	H	S	G	Y	.	I	Y	L	W	A	R	E	G	A	G	R	S	H	L	L	H	A	A	C	A	E	L	S	Q	R	G	D	A	V	G	Y	V	P	L	D	K	R	.	.	.	.	.	.	.	.
Query Conservation																																				.																																						.	.	.	.	.	.	.	.
Alig confidence							.								.	.																				.																																						.	.	.	.	.	.	.	.
Template Conservation							.								.	.
Template Sequence		K	Y	R	P	K	.	S	L	N	A	L	S	H	.	.	N	E	E	L	T	N	F	L	K	S	L	S	D	Q	P	R	D	L	P	H	L	L	L	Y	G	P	N	G	T	G	K	K	T	R	C	M	A	L	L	E	S	I	F	G	P	G	V	Y	R	N	V	V	S	S	P	Y	H	L	E	I	T	P	S	N	D
Template Known Secondary structure		T	T				.	S	G	G	G			S	.	.										T	T	T	T		T	T										S	T	T	S	S							T						S		T	T									S	S
Template Predicted Secondary structure							.								.	.
Template SS confidence
		7	.	.	10	.		.	.	.	.	.	.	.			.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
						83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	T	W	F	V	P	E	V	L	D	G	M	E	H	L	S	L	V	C	I	D	N	I	E	C	I	A	G	D	E	L	W	E	M	A	I	F	D	L	Y	N	R	I	L	E	S	G	K	T	R	L	L	I	T	G	D	R	P	P	R	Q	L	N	L	G	L	P	D	L	A	S	R	L	D	W	G	Q
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																											.	.															.	.																					.	.	.	.	.	.	.
Template Conservation																																.	.															.	.																					.	.	.	.	.	.	.
Template Sequence		R	I	V	I	Q	E	L	L	K	E	V	A	Q	M	E	Q	R	Y	K	C	V	I	I	N	E	A	N	S	L	T	.	.	K	D	A	Q	A	A	L	R	R	T	M	E	K	Y	.	.	S	K	N	I	R	L	I	M	V	C	D	S	M	S	P	I	I	A	P	I	.	.	.	.	.	.	.	K	S	Q	C	L
Template Known Secondary structure													T	T	T	T											T	T	S	S		.	.														S	.	.	T	T	T								S		S		S	S					.	.	.	.	.	.	.		T	T	S
Template Predicted Secondary structure																																.	.															.	.																					.	.	.	.	.	.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.	.	.			150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.								170	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		I	Y	K	L	Q	P	L	S	D	E	D	K	L	Q	A	L	Q	L	R	A	R	L	R	G	F	E	L	.	P	E	D	V	G	R	F	L	L	K	R	L	D	R	E	M	R	T	L	F	M	T	L	D	Q	L	D	R
Query Conservation																													.
Alig confidence																													.
Template Conservation
Template Sequence		L	I	R	C	P	A	P	S	D	S	E	I	S	T	I	L	S	D	V	V	T	N	E	R	I	Q	L	E	T	K	D	I	L	K	R	I	A	Q	A	S	N	G	N	L	R	V	S	L	L	M	L	E	S	M	A	L
Template Known Secondary structure																									T						S											T	T										T
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions