Job Description P69931 Confidence 99.72% Date Thu Jan 5 12:12:24 GMT 2012 Rank 54 Aligned Residues 205 % Identity 14% Template c1ojlF_ PDB info PDB header:response regulator Chain: F: PDB Molecule:transcriptional regulatory protein zrar; PDBTitle: crystal structure of a sigma54-activator suggests the2 mechanism for the conformational switch necessary for3 sigma54 binding Resolution 3.0 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																			.																																																						.	.	.	.	.	.	.	.	.
Query SS confidence																			.																																																						.	.	.	.	.	.	.	.	.
Query Sequence		W	P	G	D	N	S	S	L	L	A	A	L	Q	N	V	L	R	.	Q	E	H	S	G	Y	I	Y	L	W	A	R	E	G	A	G	R	S	H	L	L	H	A	A	C	A	E	L	S	Q	R	G	D	A	V	G	Y	V	P	L	D	K	R	T	W	F	V	P	E	V	L	D	G	.	.	.	.	.	.	.	.	.
Query Conservation																			.																																																						.	.	.	.	.	.	.	.	.
Alig confidence																			.																																																						.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	I	G	S	S	P	A	M	Q	H	L	L	N	E	I	A	M	V	A	P	S	D	A	T	V	L	I	H	G	D	S	G	T	G	K	E	L	V	A	R	A	L	H	A	C	S	A	R	S	D	R	P	L	V	T	L	N	C	A	A	L	N	E	S	L	L	E	S	E	L	F	G	H	E	K	G	A	F	T	K
Template Known Secondary structure																					S	T	T									T	T	S	S												S	S		S	S	S								T	T											T				S	S	S
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
									93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.										.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	M	E	H	L	S	L	V	C	I	D	N	I	E	C	I	A	G	D	E	L	W	E	M	A	I	F	D	L	Y	N	R	I	L	E	S	.	.	.	.	.	.	.	.	.	G	K	T	R	L	L	I	T	G	D	R	P	P	R	Q	L	N	L	G	L	P	D	L	A	S	R	L	D	W
Query Conservation		.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																	.	.																		.	.	.	.	.	.	.	.	.
Template Conservation																									.	.
Template Sequence		R	R	E	G	R	F	V	E	A	D	G	G	T	L	F	L	D	E	I	G	D	I	S	.	.	P	L	M	Q	V	R	L	L	R	A	I	Q	E	R	E	V	Q	R	V	G	S	N	Q	T	I	S	V	D	V	R	L	I	A	A	T	H	R	D	L	A	E	E	V	S	A	G	R	F	R	Q	D	L	Y	Y	R
Template Known Secondary structure						T	T	G	G	G	T	T	S							G	G	G			.	.													S	S					S	S	S															S	S									T	S	S
Template Predicted Secondary structure																									.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		157	.	.	160	.	.	.	.	.	.	.	.	.												170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.																												.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.																												.
Query Sequence		G	Q	I	Y	K	L	Q	P	L	S	D	E	D	.	.	.	.	.	.	.	.	.	.	.	K	L	Q	A	L	Q	L	R	A	R	L	R	G	F	E	L	P	E	D	V	G	R	F	L	L	K	R	.	L	D	R	E	M	R	T	L	F	M	T	L	D	Q	L	D	R	A	S	I	T	A	Q	R	K	L	T	I
Query Conservation															.	.	.	.	.	.	.	.	.	.	.																												.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.																												.															.	.
Template Conservation																																																																				.	.
Template Sequence		L	N	V	V	A	I	E	M	P	S	L	R	Q	R	R	E	D	I	P	L	L	A	D	H	F	L	R	R	F	A	E	R	N	R	K	V	V	K	G	F	T	P	Q	A	M	D	L	L	I	H	Y	D	W	P	G	N	I	R	E	L	E	N	A	I	E	R	.	.	A	V	V	L	L	T	G	E	Y	I	S	E
Template Known Secondary structure				S								G	G	G	G	G	G	G																T	T						B														T	T												.	.							S	S	S	B		G
Template Predicted Secondary structure																																																																				.	.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.			.	.	370	.	.	.	.	.	.	.	.	.
		225	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	F	V	K	E	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	E	L	P	L	A	I
Template Known Secondary structure		G	G	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		380	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions