Job Description P69931 Confidence 99.72% Date Thu Jan 5 12:12:24 GMT 2012 Rank 53 Aligned Residues 205 % Identity 11% Template c1ny5A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state Resolution 2.40 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.																																																			.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.																																																			.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	P	G	D	N	S	S	L	L	A	A	L	Q	N	V	L	R	.	Q	E	H	S	G	Y	I	Y	L	W	A	R	E	G	A	G	R	S	H	L	L	H	A	A	C	A	E	L	S	Q	R	G	D	A	V	G	Y	V	P	L	D	K	R	T	W	F	V	P	E	V	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																			.																																																			.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.																																																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	V	F	E	S	P	K	M	K	E	I	L	E	K	I	K	K	I	S	C	A	E	C	P	V	L	I	T	G	E	S	G	V	G	K	E	V	V	A	R	L	I	H	K	L	S	D	R	S	K	E	P	F	V	A	L	N	V	A	S	I	P	R	D	I	F	E	A	E	L	F	G	Y	E	K	G	A	F	T	G
Template Known Secondary structure						S														T	T			S							S	T	T	S	S												S	T	T	T	T	S							T	T	T	S												B		T	T	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
									90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.										.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	L	D	G	M	E	H	L	S	L	V	C	I	D	N	I	E	C	I	A	G	D	E	L	W	E	M	A	I	F	D	L	Y	.	.	.	.	.	.	.	.	.	N	R	I	L	E	S	G	K	T	R	L	L	I	T	G	D	R	P	P	R	Q	L	N	L	G	L	P	D	L	A	S	R
Query Conservation		.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																				.	.												.	.	.	.	.	.	.	.	.
Template Conservation																												.	.
Template Sequence		A	V	S	S	K	E	G	F	F	E	L	A	D	G	G	T	L	F	L	D	E	I	G	E	L	S	.	.	L	E	A	Q	A	K	L	L	R	V	I	E	S	G	K	F	Y	R	L	G	G	R	K	E	I	E	V	N	V	R	I	L	A	A	T	N	R	N	I	K	E	L	V	K	E	G	K	F	R	E	D	L
Template Known Secondary structure				S		B							T	T	T	S						S	G	G	G			.	.														S					B	T			S													S	S								T	T	S	S
Template Predicted Secondary structure																												.	.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.									.	.	.	.	.	.	.	.	180	.	.	.	.				.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.														.	.	.													.
Query SS confidence																				.	.	.	.	.	.	.	.														.	.	.													.
Query Sequence		L	D	W	G	Q	I	Y	K	L	Q	P	L	S	D	E	D	K	L	.	.	.	.	.	.	.	.	Q	A	L	Q	L	R	A	R	L	R	G	F	E	.	.	.	L	P	E	D	V	G	R	F	L	L	K	R	.	L	D	R	E	M	R	T	L	F	M	T	L	D	Q	L	D	R	A	S	I	T	A	Q	R	K
Query Conservation																				.	.	.	.	.	.	.	.														.	.	.													.
Alig confidence																				.	.	.	.	.	.	.	.														.	.	.													.															.	.
Template Conservation																																																																							.	.
Template Sequence		Y	Y	R	L	G	V	I	E	I	E	I	P	P	L	R	E	R	K	E	D	I	I	P	L	A	N	H	F	L	K	K	F	S	R	K	Y	A	K	E	V	E	G	F	T	K	S	A	Q	E	L	L	L	S	Y	P	W	Y	G	N	V	R	E	L	K	N	V	I	E	R	.	.	A	V	L	F	S	E	G	K	F
Template Known Secondary structure						T	T								G	G	G																				T	T																	S			T	T												.	.							S	S
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.			.	.	.	.	370	.	.	.	.
		222	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	I	P	F	V	K	E	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	D	R	G	E	L	S	C	L	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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