Job Description P0CF09 Confidence 97.19% Date Thu Jan 5 11:30:42 GMT 2012 Rank 8 Aligned Residues 80 % Identity 19% Template c3gn5B_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021); PDBTitle: structure of the e. coli protein mqsa (ygit/b3021) Resolution 2.15 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.											.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	S	C	P	S	C	S	A	T	D	G	V	V	R	N	G	K	S	T	A	.	.	.	.	.	.	.	.	.	.	G	H	Q	R	Y	L	C	S	H	C	R	K	T	W	Q	L	Q	F	T	Y	T	A	S	Q	P	G	T	H	Q	K	I	I	D	M	A	M	N	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																						.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	K	C	P	V	C	H	Q	G	E	M	V	S	G	I	K	D	I	P	Y	T	F	R	G	R	K	T	V	L	K	G	I	H	G	L	Y	C	V	H	C	E	E	S	I	M	N	K	E	E	S	D	A	F	M	A	Q	V	K	A	F	R	A	S	V	N	A	E	T	V	A	P	E	F	I	V	K	V	R	K	K
Template Known Secondary structure			B		T	T	T	S	S	S	B													T	T														T	T	T																											T	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
			63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	G	V	G	C	R	A	T	A	R	I	M	G	V	G	L	N	T	I	F	R	H	L	K
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		L	S	L	T	Q	K	E	A	S	E	I	F	G	G	G	V	N	A	F	S	R	Y	E	K
Template Known Secondary structure		T	T												S		T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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