Job Description P77539 Confidence 100.00% Date Thu Jan 5 12:30:22 GMT 2012 Rank 41 Aligned Residues 312 % Identity 17% Template c3pi7A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadh oxidoreductase; PDBTitle: crystal structure of a putative nadph:quinone reductase (mll3093) from2 mesorhizobium loti at 1.71 a resolution Resolution 1.71 Å

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		1	.	.	.	.	.	.	.	.	10														.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Query Sequence		M	K	A	L	A	R	F	G	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	G	Y	K	M	I	D	V	P	Q	P	M	C	G	P	E	D	V	V	I	E	I	K	A	A	A	I	C	G	A	D	M	K	H	Y	N	V	D	S	G	S	D	.	E	F	N	S	I	R	G	H	E	F	A	G	C
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Template Conservation
Template Sequence		X	K	A	L	L	L	V	G	D	G	Y	T	K	T	P	S	G	S	A	L	E	A	X	E	P	Y	L	E	Q	G	R	I	A	V	P	A	P	G	P	S	Q	V	L	I	K	V	N	L	A	S	I	N	P	S	D	V	A	F	I	K	G	Q	Y	G	Q	P	R	V	K	G	R	P	A	G	F	E	G	V	G	T
Template Known Secondary structure									S		B	S		S	S				S					S	T	T	T													T	T																				T	T		S	S	S		B		T	T	S	B			S
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	Q	V	G	E	K	V	K	D	W	K	V	G	Q	R	V	V	S	D	N	S	G	H	V	C	G	V	C	P	A	C	E	Q	G	D	F	L	C	C	T	E	K	V	N	L	G	L	D	N	N	T	W	G	G	G	F	S	K	Y	C	L	V	P	G	E	I	L	K	I	H	R	H	A	L	W	E	I	P	D
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Sequence		I	V	A	G	G	D	E	P	Y	A	K	S	L	V	G	K	R	V	A	F	A	T	G	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	W	G	S	W	A	E	Y	A	V	A	E	A	A	A	C	I	P	.	.	.	.	.	.	.	L	L	D
Template Known Secondary structure							S	S							T	T								T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S			S	S	B	S						G	G	G				.	.	.	.	.	.	.			T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.																												.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.								.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		G	V	D	Y	E	D	A	A	V	L	D	P	I	C	N	A	Y	K	S	I	A	Q	Q	S	K	F	L	P	G	Q	D	V	V	V	I	.	G	T	G	P	L	G	L	F	S	V	Q	M	A	R	I	M	G	A	V	N	I	V	V	V	G	L	Q	E	D	V	A	V	R	F	P	V	A	K	E	L	G	A	T	A
Query Conservation																																					.
Alig confidence																																					.																																												.
Template Conservation																																																																																	.
Template Sequence		T	V	R	D	E	D	G	A	A	X	I	V	N	P	L	T	A	I	A	X	F	D	I	V	K	Q	E	G	E	K	A	F	V	X	T	A	G	A	S	Q	L	C	K	L	I	I	G	L	A	K	E	E	G	F	R	P	I	V	T	V	R	R	D	E	Q	I	A	L	L	K	D	I	G	A	A	H	V	L	N	.
Template Known Secondary structure		T	S						T	T	S	S																			S					S	S	T	T	S														T								S		G	G	G								T		S					.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280			.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																																																									.	.
Query SS confidence																																																									.	.
Query Sequence		V	V	N	G	S	T	E	D	V	V	A	R	C	Q	Q	I	C	G	K	D	N	L	G	L	V	I	E	C	S	G	A	N	I	A	L	K	Q	A	I	E	M	L	R	P	N	G	E	V	V	R	V	G	M	G	F	.	.	K	P	L	D	F	S	I	N	D	I	T	A	W	N	K	S	I	I	G	H	M	A	Y
Query Conservation																																																									.	.
Alig confidence		.	.	.	.																																																				.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	E	K	A	P	D	F	E	A	T	L	R	E	V	X	K	A	E	Q	P	R	I	F	L	D	A	V	T	G	P	L	A	S	A	I	F	N	A	X	P	K	R	A	R	W	I	I	Y	G	R	L	D	P	D	A	T	V	I	R	E	P	G	Q	L	I	F	Q	H	K	H	I	E	G	F	W	L	S
Template Known Secondary structure		.	.	.	.	T	T	S	T	T																				S	S												S		T	T									S			S					S		T						S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		304										.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.
Query Sequence		D	.	.	.	.	.	.	.	.	.	S	T	S	W	R	N	A	I	R	L	L	A	S	G	A	I	K	V	K	P	M	I	T	H	R	I	G	L	S	Q	W	R	E	G	F	D	A	M	V	D	K	T	A	I	K	V	I	M	T	Y
Query Conservation			.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.																			.	.	.
Template Conservation																														.	.	.
Template Sequence		E	W	X	R	Q	F	K	E	R	R	G	P	A	I	L	E	A	Q	K	R	F	S	D	G	R	W	S	T	.	.	.	V	T	A	V	V	P	L	A	E	A	I	A	W	V	P	A	E	L	T	K	P	N	G	K	V	F	I	R	P
Template Known Secondary structure							T																	T	S	S				.	.	.																			T	S	S	S	S
Template Predicted Secondary structure																														.	.	.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.				.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions