Job Description P77539 Confidence 100.00% Date Thu Jan 5 12:30:22 GMT 2012 Rank 54 Aligned Residues 313 % Identity 15% Template c2j3iB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:nadp-dependent oxidoreductase p1; PDBTitle: crystal structure of arabidopsis thaliana double bond2 reductase (at5g16970)-binary complex Resolution 2.8 Å

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		1	.	.	.	.	.	.	.						.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.				.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.				.	.	.	.	.	.	.	60	.			.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.																	.	.	.																													.	.	.										.	.
Query SS confidence										.	.	.	.	.																	.	.	.																													.	.	.										.	.
Query Sequence		M	K	A	L	A	R	F	G	.	.	.	.	.	K	A	F	G	G	Y	K	M	I	D	V	P	Q	P	M	C	.	.	.	G	P	E	D	V	V	I	E	I	K	A	A	A	I	C	G	A	D	M	K	H	Y	N	V	D	S	G	S	.	.	.	D	E	F	N	S	I	R	G	H	.	.	E	F	A	G	C	I
Query Conservation										.	.	.	.	.																	.	.	.																													.	.	.										.	.
Alig confidence										.	.	.	.	.																	.	.	.																													.	.	.										.	.
Template Conservation
Template Sequence		N	K	Q	V	I	L	K	D	Y	V	S	G	F	P	T	E	S	D	F	D	F	T	T	T	T	V	E	L	R	V	P	E	G	T	N	S	V	L	V	K	N	L	Y	L	S	C	D	P	Y	M	R	I	R	M	G	K	P	D	P	S	T	A	A	L	A	Q	A	Y	T	P	G	Q	P	I	Q	G	Y	G	V	S
Template Known Secondary structure				B				S	S		B	S	S	S			G	G	G											S				S	S	S													G	G	G	G	T	T	T	B				T	T	T	T			.					T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		1005	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	V	G	E	K	V	K	D	W	K	V	G	Q	R	V	V	S	D	N	S	G	H	V	C	G	V	C	P	A	C	E	Q	G	D	F	L	C	C	T	E	K	V	N	L	G	L	D	N	N	T	W	G	G	G	F	S	K	Y	C	L	V	P	G	E	I	L	K	I	H	R	H	A	L	W	E	I	P	D	G
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Sequence		R	I	I	E	S	G	H	P	D	Y	K	K	G	D	L	L	W	G	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	W	E	E	Y	S	V	I	T	P	M	.	.	.	.	.	.	.	T	H	A	H	F	K	I	Q	H	T	D
Template Known Secondary structure								S	T	T			T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	B	S	S							.	.	.	.	.	.	.	T	T	T								S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template SS confidence
		1085	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.																																.	.	.	.	.	1110	.	.	.	.	.								.	.	.	.	1120	.	.	.	.	.	.
		148	.	150	.	.	.	.	.				.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure										.	.	.
Query SS confidence										.	.	.
Query Sequence		V	D	Y	E	D	A	A	V	.	.	.	L	D	P	I	C	N	A	Y	K	S	I	A	Q	Q	S	K	F	L	P	G	Q	D	V	V	V	I	G	T	G	P	L	G	L	F	S	V	Q	M	A	R	I	M	G	A	V	N	I	V	V	V	G	L	Q	E	D	V	A	V	R	F	P	V	A	K	E	L	G	A	T
Query Conservation										.	.	.
Alig confidence										.	.	.																																																									.	.	.
Template Conservation																																																																					.	.	.
Template Sequence		V	P	L	S	Y	Y	T	G	L	L	G	M	P	G	M	T	A	Y	A	G	F	Y	E	V	C	S	P	K	E	G	E	T	V	Y	V	S	A	A	S	G	A	V	G	Q	L	V	G	Q	L	A	K	M	M	G	C	Y	V	V	G	S	A	G	S	K	E	K	V	.	.	.	D	L	L	K	T	K	F	G	F	D
Template Known Secondary structure		S		G	G	G	G	G	T	T	T	S												T	T	S				T	T						S	S		S	S	T	T										T	T	T								S	S	T	T			.	.	.					T	T	T			S
Template Predicted Secondary structure																																																																					.	.	.
Template SS confidence
		1127	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.				.	.	.	.	.	.	1200	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.							.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.
Query Sequence		A	V	V	N	G	S	T	E	D	V	V	A	R	C	Q	Q	I	C	G	K	D	N	L	G	L	V	I	E	C	S	G	A	N	I	A	L	K	Q	A	I	E	M	L	R	P	N	G	E	V	V	R	V	G	.	.	.	.	.	.	M	G	F	K	P	L	D	F	S	I	N	D	I	T	A	W	N	K	S	I	I
Query Conservation																																																							.	.	.	.	.	.
Alig confidence																																		.																					.	.	.	.	.	.
Template Conservation																																		.
Template Sequence		D	A	F	N	Y	K	E	E	S	D	L	T	A	A	L	K	R	C	F	P	N	G	I	D	I	Y	F	E	N	V	G	G	.	K	M	L	D	A	V	L	V	N	M	N	M	H	G	R	I	A	V	C	G	M	I	S	Q	Y	N	L	E	N	Q	E	G	V	H	N	L	S	N	I	I	Y	K	R	N	R	I	Q
Template Known Secondary structure						T	T	T		S	S										T	T		B	S					S	S		T	.										B		T	T									T	T	G	G	G		S	S							G	G	G	G	G	T	S
Template Predicted Secondary structure																																		.
Template SS confidence
		1204	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.		.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.
		299	300	.	.	.						.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.		.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.																																													.
Query SS confidence							.	.	.	.	.																																													.
Query Sequence		G	H	M	A	Y	.	.	.	.	.	D	S	T	S	W	R	N	A	I	R	L	L	A	S	G	A	I	K	V	K	P	M	I	T	H	R	I	G	L	S	Q	W	R	E	G	F	D	A	M	V	D	K	T	A	.	I	K	V	I	M	T	Y	D	F	D
Query Conservation							.	.	.	.	.																																													.
Alig confidence							.	.	.	.	.																					.	.																							.
Template Conservation																																.	.
Template Sequence		G	F	V	V	S	D	F	Y	D	K	Y	S	K	F	L	E	F	V	L	P	H	I	R	E	G	K	I	T	Y	V	.	.	E	D	V	A	D	G	L	E	K	A	P	E	A	L	V	G	L	F	H	G	K	N	V	G	K	Q	V	V	V	V	A	R	E
Template Known Secondary structure					G	G	G	G	T	T	T	T												T	T	T	S					.	.					B	S	G	G	G								T	T	T	T			S	S						S	S
Template Predicted Secondary structure																																.	.
Template SS confidence
		1283	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.			.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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